ENST00000594358.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000594358.1 |
Source |
Gencode19 |
Same with |
NONHSAT033927 |
Classification |
intergenic |
Length |
679 nt |
Genomic location |
chr13+:52028300..52042916 |
Exon number |
2 |
Exons |
52028300..52028465,52042404..52042916 |
Genome context |
|
Sequence |
000001 CCGTGGGAGG GAAGGCACTC TCTGTCAAGC TGCTGTCACC TTACCTGAAG TAAGGAGTCC ACGCCTGCAT GTCCGAGGAA 000080
000081 AACAGTTTTC TCAAACACAT TAGTTGAAAA ACTGAAGACG CTGCCTAAAA TACAAGCTGA GTTAGAGACA GCCCTTGTAA 000160 000161 GACTAGAAAA AGAAATGGAA ACTAAGTAAC ATGAATTAAC ATAGTCCAGG GTCACAAAGC AACATGGAAC AAGAACCTGG 000240 000241 ATCTGAATTC AGAGGCAGAA TGCTGGGTAA GTATGACGAT GCTTATTGTT GGCCCACCTG TGGGAATTGG GGGTTAGGGA 000320 000321 CAGGTTTCCC AACCTTGTGA TGACTATAGG AACCGGGATT CAAGGGAGAC ACAGGCATAA AGGAAGATGT CAGGGAGACC 000400 000401 ATCAACAAAG TATCATGTAA GGCAGGAATT TGCTCACAGG AAAATGGGAA GGATAAAAGG GGACGTTAGT GAGAATGTCA 000480 000481 TTTTAATATT CAGTTCACTA ATCTCCAAAG ACCGATGTTC TAAAAGAAAG TGTGAATAAA ATAGTTTAAC ATCTTATTAT 000560 000561 GCAATATCTA TCACTGATGA TAGGCACATA AGGAGTTCTC GTTACATCTA CTTAATTTGC CAGATTAACT GATGCTCCTT 000640 000641 GTTCCTTCTT TCTTTACTTT TTCTTTTTAG AGATAGGGT |
Predicted Small Protein
Name | ENST00000594358.1_smProtein_386:538 |
Length | 51 |
Molecular weight | 5810.7197 |
Aromaticity | 0.06 |
Instability index | 54.458 |
Isoelectric point | 10.1388549805 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0465072916054 |
Amino acid sequence | MSGRPSTKYHVRQEFAHRKMGRIKGDVSENVILIFSSLISKDRCSKRKCE |
Secondary structure | LLLLLLLLHHHHHHHHHHHLLLEELLLLLLEEEEELLEEELLLLLLLLLL |
PRMN | - |
PiMo | - |