ENST00000593611.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000593611.1

Source

Gencode19

Same with

NONHSAT089230

Classification

antisense

Length

755 nt

Genomic location

chr3-:42558219..42573554

Exon number

7

Exons

42558219..42558328,42560743..42560882,42562806..42562864,42562969..42563069,42570041..42570150,42572352..42572544,42573513..42573554

Genome context

Sequence
000001 AAGGACTGTG CTCCCAATCC GCTTACGCTC AAGGAAGAAC TGGCAGGACC TGCAGCTAAG CAAGACGTAG GACTGCAAGC 000080
000081 TGGGTTGGCA CCCTCCCCCT AGGGAGTTCT CCAGGCCTTG CCCCCTCTGT CCCCAGCCTG GAAGCCCTCC CTGGTACCAT 000160
000161 ACCCCAGCCG ATGAGTATGT ACCCCCAGAA GTACTTCCGC TCAGAGAAGA AGGAGACGGC AAGCAGGGTG TACAGGAAGG 000240
000241 CCCAGAACCA GCCTGCTGTC AGGATCAGAA CAAAAGAGGA GGACTGCATA TGTATGGACC CACTCCAGAT GGCACGGGGA 000320
000321 CGGGGGGAGT AGGAAAAGTG GCATGGTCCC TTCCCGTGGA TATAATTCTT CCCAGGCCTG TTGTGTGAGT TGGTGATGCC 000400
000401 ATCATTCCTG CCTCACACTT GCAAACTTCC CTCTTTGGAA TTTCAGAGAC CAGGCCCACA GAGTATGGCT GTGCAAGTTG 000480
000481 TTCACTCTAC AAGGGCACCT GGCCGAGGTG AGTCCCCACT CCAGCCGGCC CCACTCACAT CACCTCTTCA ACCCAGGGGT 000560
000561 CTTACCTTGA ATGGAGGAGA AGAGCTTGAA GATGAGGGGA CAGGCCAAGA CAACTACCTG GCCCCGAGGG GTGGCTGGCC 000640
000641 AGCAGATGAG GAAATGGAGG CACAGACTGA TTAGAAAACC AGCTCAAGGT CATGTTGCTG GTAAGCGGTA CAGTCTATTC 000720
000721 CCACTCCTCT TGGTTGGAAG GCCTGTCATT TCTCT
[back to top]

Predicted Small Protein

Name ENST00000593611.1_smProtein_395:673
Length 93
Molecular weight 9906.8757
Aromaticity 0.0434782608696
Instability index 69.0195652174
Isoelectric point 4.59967041016
Runs 9
Runs residual 0.0373787926181
Runs probability 0.0432785726903
Amino acid sequence MPSFLPHTCKLPSLEFQRPGPQSMAVQVVHSTRAPGRGESPLQPAPLTSPLQPRGLTLNG
GEELEDEGTGQDNYLAPRGGWPADEEMEAQTD
Secondary structure LLLLLLLLLLLLLLLLLLLLLLEEEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLEELLL
LEEEELLLLLLLLLLLLLLLLLHHHHHHHLLL
PRMN -
PiMo -