ENST00000591974.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000591974.1

Source

Gencode19

Same with

lnc-TCF4-5:5

Classification

intergenic

Length

1884 nt

Genomic location

chr18-:53750587..53804767

Exon number

9

Exons

53750587..53751181,53752436..53752620,53754870..53754991,53757416..53757534,53769922..53770060,53772758..53772844,53788509..53788677,53789524..53789760,53804537..53804767

Genome context

Sequence
000001 ATAGATGAAT AGAATGAGCA AAAGTTGCAG CACAGCGTGT CACCAGAGAG GAAAAGAATA TCCTTGCTGT GCCAAGAAAG 000080
000081 AAAAGACCAT GGATCTACTA GTTGCAGATT TCAGCAGTAA TGCCAAGGGG GCAAGAAGTG ACCAGCAGAA CAATTAGGCC 000160
000161 ATGGCAACAG AAGCCAACTA CAACCCATGT TCCAATCTAT GACCTCCCTC TCCTGCTGGT ACAAGGATAT GGACTAGCCT 000240
000241 AGATGATGAT GGCTCACCAA TTTCCTTGCA AGGGCAAGAG CTGATAATCA ACTGACTAAT GAGGATTGAC TTCTACAATT 000320
000321 GATGAGCATG GAATTGGATG TGCCTAAATC AACAGAAGAG GGATTTTGAT GTCATCACAC TGTAGCCCCA GAAGACAGAA 000400
000401 CGCTCAAAGG TGTCAATGGG CAGAATTTGT AGATGACATA CAGCATCCAA TGGATTACTC CTATTCAGTA TTCCTTAGAG 000480
000481 CAAAGGATGC AATGTCAAGC AAGTTGTGAT ACCTCAACTA TCTACAATTT AACACCAAGG AAAGAACACT GTTTGGAGAA 000560
000561 ATGAGAAAGA TTATCATCAG TGTCTTTCAG AAGTCATCAA AAGAAGAAAA GGAGAAAAGA GAGGAGAAAG CAGAAAGATC 000640
000641 TGGAGTCTGG GAAGTTCAAG AGCATGGCAC CAACATCTGG CAAGGGCTTT CATTCTGCAT CATCTCATGG AGGAAAATAA 000720
000721 AAAGGAGGCT GGATGCTCCT GTGAAGTACG TCTTTTATCT ACTTGCTATC TTTGCAATTC CTTCATGCTA CAATGAGAGA 000800
000801 TAGAGTTTAA ACCTGAAAAC ATTCTTGGAA AAGGAATCTT CATTAATTCA AATATACCAC AAGATTCACC ACCATCACTA 000880
000881 CTCTAAGTAT TTTTCTTCTT GAGAAAGAGA AGGAGAGGGA AAGCAAGGAA GAGGAAGAGA AAGAGAAATG GATAAAAACA 000960
000961 TGGTCAAGTA GAAGAGTCTG TGATTTCAGG TAAATCCAGA TTTGGAGCTT AAATGACTCA AATGCTTTGC CTACATTGAT 001040
001041 CCTACATTCA GGCTGCTTAC ATATCTCTTG GCTTCTCTGA GAACCAGATT GTCACCACTT AAAGTGTCTT CCAGAGTCCT 001120
001121 CACGAGTATC AGAGAAGGCA TAATCTGTAC ACGTGGCTTC ATTTAAAATG AAAATATCAA GCAGTGTCAT TTTCACAAGT 001200
001201 ATCCCCACAC TGTCTGAGGC TGAAAAGAAG AGTGTAGCTA TGCACACTGC AGTGAGAAGA AAATTTCAGC TCAATTGGAG 001280
001281 GATGTAAAGA TTGAAATACC ACTGCTCCTA GTTCTGATGC AAAATTGAAA AGAGTGCACT GGGTCTTCAA ATGGCATATT 001360
001361 GACAAGGAGA AAGAGGAAAG GATGCCCCAG GACAGCCTGG GGGTCAAGGC TGGGCTCAGG CATGCCTGGA CAAGCCATGC 001440
001441 AAGTTGTCTC CGGACTTGAA CCACGTATCA GAGGAGCTAT TTGAGGAGCC ACATCAGCAT ACCTGCTTCT GTGGGCCCCC 001520
001521 AGGCTGTGGT GCTCAGCCCT TGCACTATGA AACATTTTTT TTTTCCAGAA GCCAAAGCTT TGAGCATCTC CTCCCATGTA 001600
001601 GAGAGTGTAT ATGTTTACGT CCATGTCTTT CGCCATGTGA ACGCATGCAA CCACCACCTC AAATATCATA AATCCTCTCT 001680
001681 CTCCCCCTTT CTGTCTGCCT GTTTATCTAC AATCTGTCTA TTTAAATTCT TTTTAAACAA GAAGGGAATA TCTTTATGCC 001760
001761 TGTTTGTAGG GATATTCTAC ATCCATCTGT TATTTACATC ATTCGTTTTC CTGAGGTGTC TCCAACAAAT CCTGGCTGGA 001840
001841 TGCACTGTAT GTGTTATTAA TAAAACAGCT GTAAAAATAT TAAC
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Predicted Small Protein

Name ENST00000591974.1_smProtein_560:802
Length 81
Molecular weight 9593.0824
Aromaticity 0.125
Instability index 54.482625
Isoelectric point 9.59368896484
Runs 14
Runs residual 0.0361842105263
Runs probability 0.0467673555908
Amino acid sequence MRKIIISVFQKSSKEEKEKREEKAERSGVWEVQEHGTNIWQGLSFCIISWRKIKRRLDAP
VKYVFYLLAIFAIPSCYNER
Secondary structure LLEEEEEEELLLLHHHHHHHHHHHHLLLLEEEELLLLHHHHHHLLLEEEHHHHHHHLLLL
HHHHHHHHHHHHLLLLLLLL
PRMN -
PiMo -