ENST00000591974.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000591974.1 |
Source |
Gencode19 |
Same with |
lnc-TCF4-5:5 |
Classification |
intergenic |
Length |
1884 nt |
Genomic location |
chr18-:53750587..53804767 |
Exon number |
9 |
Exons |
53750587..53751181,53752436..53752620,53754870..53754991,53757416..53757534,53769922..53770060,53772758..53772844,53788509..53788677,53789524..53789760,53804537..53804767 |
Genome context |
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Sequence |
000001 ATAGATGAAT AGAATGAGCA AAAGTTGCAG CACAGCGTGT CACCAGAGAG GAAAAGAATA TCCTTGCTGT GCCAAGAAAG 000080
000081 AAAAGACCAT GGATCTACTA GTTGCAGATT TCAGCAGTAA TGCCAAGGGG GCAAGAAGTG ACCAGCAGAA CAATTAGGCC 000160 000161 ATGGCAACAG AAGCCAACTA CAACCCATGT TCCAATCTAT GACCTCCCTC TCCTGCTGGT ACAAGGATAT GGACTAGCCT 000240 000241 AGATGATGAT GGCTCACCAA TTTCCTTGCA AGGGCAAGAG CTGATAATCA ACTGACTAAT GAGGATTGAC TTCTACAATT 000320 000321 GATGAGCATG GAATTGGATG TGCCTAAATC AACAGAAGAG GGATTTTGAT GTCATCACAC TGTAGCCCCA GAAGACAGAA 000400 000401 CGCTCAAAGG TGTCAATGGG CAGAATTTGT AGATGACATA CAGCATCCAA TGGATTACTC CTATTCAGTA TTCCTTAGAG 000480 000481 CAAAGGATGC AATGTCAAGC AAGTTGTGAT ACCTCAACTA TCTACAATTT AACACCAAGG AAAGAACACT GTTTGGAGAA 000560 000561 ATGAGAAAGA TTATCATCAG TGTCTTTCAG AAGTCATCAA AAGAAGAAAA GGAGAAAAGA GAGGAGAAAG CAGAAAGATC 000640 000641 TGGAGTCTGG GAAGTTCAAG AGCATGGCAC CAACATCTGG CAAGGGCTTT CATTCTGCAT CATCTCATGG AGGAAAATAA 000720 000721 AAAGGAGGCT GGATGCTCCT GTGAAGTACG TCTTTTATCT ACTTGCTATC TTTGCAATTC CTTCATGCTA CAATGAGAGA 000800 000801 TAGAGTTTAA ACCTGAAAAC ATTCTTGGAA AAGGAATCTT CATTAATTCA AATATACCAC AAGATTCACC ACCATCACTA 000880 000881 CTCTAAGTAT TTTTCTTCTT GAGAAAGAGA AGGAGAGGGA AAGCAAGGAA GAGGAAGAGA AAGAGAAATG GATAAAAACA 000960 000961 TGGTCAAGTA GAAGAGTCTG TGATTTCAGG TAAATCCAGA TTTGGAGCTT AAATGACTCA AATGCTTTGC CTACATTGAT 001040 001041 CCTACATTCA GGCTGCTTAC ATATCTCTTG GCTTCTCTGA GAACCAGATT GTCACCACTT AAAGTGTCTT CCAGAGTCCT 001120 001121 CACGAGTATC AGAGAAGGCA TAATCTGTAC ACGTGGCTTC ATTTAAAATG AAAATATCAA GCAGTGTCAT TTTCACAAGT 001200 001201 ATCCCCACAC TGTCTGAGGC TGAAAAGAAG AGTGTAGCTA TGCACACTGC AGTGAGAAGA AAATTTCAGC TCAATTGGAG 001280 001281 GATGTAAAGA TTGAAATACC ACTGCTCCTA GTTCTGATGC AAAATTGAAA AGAGTGCACT GGGTCTTCAA ATGGCATATT 001360 001361 GACAAGGAGA AAGAGGAAAG GATGCCCCAG GACAGCCTGG GGGTCAAGGC TGGGCTCAGG CATGCCTGGA CAAGCCATGC 001440 001441 AAGTTGTCTC CGGACTTGAA CCACGTATCA GAGGAGCTAT TTGAGGAGCC ACATCAGCAT ACCTGCTTCT GTGGGCCCCC 001520 001521 AGGCTGTGGT GCTCAGCCCT TGCACTATGA AACATTTTTT TTTTCCAGAA GCCAAAGCTT TGAGCATCTC CTCCCATGTA 001600 001601 GAGAGTGTAT ATGTTTACGT CCATGTCTTT CGCCATGTGA ACGCATGCAA CCACCACCTC AAATATCATA AATCCTCTCT 001680 001681 CTCCCCCTTT CTGTCTGCCT GTTTATCTAC AATCTGTCTA TTTAAATTCT TTTTAAACAA GAAGGGAATA TCTTTATGCC 001760 001761 TGTTTGTAGG GATATTCTAC ATCCATCTGT TATTTACATC ATTCGTTTTC CTGAGGTGTC TCCAACAAAT CCTGGCTGGA 001840 001841 TGCACTGTAT GTGTTATTAA TAAAACAGCT GTAAAAATAT TAAC |
Predicted Small Protein
Name | ENST00000591974.1_smProtein_560:802 |
Length | 81 |
Molecular weight | 9593.0824 |
Aromaticity | 0.125 |
Instability index | 54.482625 |
Isoelectric point | 9.59368896484 |
Runs | 14 |
Runs residual | 0.0361842105263 |
Runs probability | 0.0467673555908 |
Amino acid sequence | MRKIIISVFQKSSKEEKEKREEKAERSGVWEVQEHGTNIWQGLSFCIISWRKIKRRLDAP VKYVFYLLAIFAIPSCYNER |
Secondary structure | LLEEEEEEELLLLHHHHHHHHHHHHLLLLEEEELLLLHHHHHHLLLEEEHHHHHHHLLLL HHHHHHHHHHHHLLLLLLLL |
PRMN | - |
PiMo | - |