ENST00000590413.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000590413.1 |
Source |
Gencode19 |
Same with |
NONHSAT005113 |
Classification |
overlapping(AS),antisense |
Length |
831 nt |
Genomic location |
chr1+:110925441..110960984 |
Exon number |
6 |
Exons |
110925441..110925622,110954795..110954915,110956774..110956853,110958631..110958810,110960111..110960262,110960869..110960984 |
Genome context |
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Sequence |
000001 TTGCCAGCTT TATACCTGCA CAAAAACGAA GAGATGACAT GATGGATCCA ATCCAACCAA TTTGCTCTGA GGTGCCTTCA 000080
000081 AACTCTTCTT GAAAGACCAC AAAGAAAATT GCAAAAGTCT TGGTCATCCC CATCACAAAC ACATTCACCT AAATCAAAGC 000160 000161 AGACCAGAGT CCAACTCAGG TGGAAGAGTG TCTTCATCTC TGCATCCCTA GTGCAACAGA GCATGACAAA AATTCAACAA 000240 000241 ATATTTATTG AAGAGTCTTG ATGTCTTTTG GGAAAGGAAC TCTATGGTTA CCTTTACTCT AAGTTAAAAA CAACAACAAC 000320 000321 AACAACAAAA ACACAAAACC CTGAGGCTCA GAAGATAAAT ATTTGCTGAA GATCACTGTG CTTATTAGAT GGGTGTTACT 000400 000401 GATTCTTACC TCAGAGAAGA GAATGTCATG GAGACAAAAT GACCTGCTTA GAGTTCTGCA CCCCCCAGCA TGGAGAGCAG 000480 000481 AGCGCAAAGA TTTCTTCCGG ACTCCCACAT TCCCCTTGGA ATCCAAGAAC TGGTCTACTG TCACAACACT TTAGTACCCT 000560 000561 CTTAGATGGG GATCTCACTC TGTTGCCCAG GCTGGTCTCA AACTCCTGGC TTCAAGCAAT CCTCCTGCTT CGGCCTCCCA 000640 000641 AACTTCTGGG ATTACAGATA TGAGCCACCA CGGCTGGCTG ACAGGCACCA AATTCTAGGA GAGGACTTGA ATAGACTCCC 000720 000721 AAGGAGGCAG CAGAAACTGG GGTAATCACA ACGGTCAACA GCAGCAAAGG CAGCACTTTC TGATTTACTT GACTGCTATG 000800 000801 GATGCCACCT CTCTCCACGC CTCAGTTTAA T |
Predicted Small Protein
Name | ENST00000590413.1_smProtein_422:553 |
Length | 44 |
Molecular weight | 5229.93 |
Aromaticity | 0.139534883721 |
Instability index | 42.9209302326 |
Isoelectric point | 10.7805786133 |
Runs | 7 |
Runs residual | 0.0054873268879 |
Runs probability | 0.0399348928761 |
Amino acid sequence | MSWRQNDLLRVLHPPAWRAERKDFFRTPTFPLESKNWSTVTTL |
Secondary structure | LLLLLLHHHHHLLLLHHHHHHHHLLLLLLLLLLLLLLEEELLL |
PRMN | - |
PiMo | - |