ENST00000589888.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000589888.1

Source

Gencode19

Same with

lnc-ZNF583-1:8

Classification

intergenic

Length

1274 nt

Genomic location

chr19+:56905087..56910537

Exon number

4

Exons

56905087..56905810,56909250..56909417,56909646..56909752,56910263..56910537

Genome context

Sequence
000001 TGCTGTTCGT GTGTTCGAGT CCCTGGGTTG CTTCCTGGGG TCTGTGGTGC TGGGTGTGCT ATCTGCGTGT GATTCTCTAG 000080
000081 CGAGAGATTG TGGGCGAGTG ACCGAGTGGG CAAGGGGCCG TCACTGTGTG TGCGTGATTT TGACAGTGTG TGGTGGTAGC 000160
000161 TTCTGACTCC GCGTGGGTCG TTGAATGTAT GACTGGGACC GTTTAGCGGT GGATACACAA CTGTGTGCGG CTGTGGAAGA 000240
000241 TTGCCTCATC CGTTACGTTC CCATTTCCGT GGAACAACAG TTTTACCAGA AGGTTTCGAA GGAACCTTAA AGTTTGGAAG 000320
000321 CGTAAGAGTT TATCTGGTAA CTAATTTTAA ACATTACATC TATGGTGAGT TAAATGTGGG TTATGAAGGA GAACGCAAAA 000400
000401 TAAAAACGTT ATAAAGATGT AAAGGAGTTT TATGGGGCGG CATCTCTTGG GCAAATATCA GACCGCCGTA GGTAGTTGTT 000480
000481 AATTCTCTCT TGTTTTTAGG CGGCTTTGGT GTCATCAAAT GTGAGAAGCC CTGGACTTTA CACATCCCGA GCCAGTGTGA 000560
000561 TCCAGTATGA TTGGGAGTCC GAGTGCCAGA TGCCGGTCAG GACCTGTTAT GCTGGGTCTC AGAATGCGGA AACTCTCCCT 000640
000641 GTCCGAGGTG GAACAGTTTG TCCTTGAGTG AGGACTGGAG TCCTGAGTGA CTCTTTTGAT TTGATCCTGT TTCCCTCAAA 000720
000721 CCTGAGATGG GAGCCTCACT GTATTGCCCA GGCTGGTCTT GAACTCCGGA GCTCAAGTGA TCGTCTTGCT TCAGCCTTGC 000800
000801 AAAATGATGG TGAAGCTGCA TCATTGTCTG GGGTAAATAC CTGAGGTTCG TTGTCTCACG CCAAGGGAAT CAAGGACGTG 000880
000881 GACACACAAG AAATGGAGTC CCTGTCTGAC CGGGCCATGT TGTATGTTCC TTGCTGTACA CGTGGTTGAC AAAGAAAAGG 000960
000961 GAAGATGGAG CTGCGATGTT GGACATGCCT GGCCCCCAGG ACATACAGCC CTGCCGAGCA AATAATGAAC GTAACTCACA 001040
001041 AACTTCCTGC TTATCATCAA ACGCACGCAT CCACTTATCA TCAAACACCT CGGGTGACAG AAGAATGCAG GTCAGCTCCC 001120
001121 TGCTGCCTTG GCATTATCAA TCAGCCCAGG AACCATCCTA TAAAATCTCC AGCAAGCCTT TGTTTCCTTG CAGTCAGCTC 001200
001201 CTCTTCCACT GATTCTGCCT GTTGCTCCCT GATAACATAC TTTGATACTG TCTTTAATAA ATCTGCCTTT CTTC
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Predicted Small Protein

Name ENST00000589888.1_smProtein_566:670
Length 35
Molecular weight 3778.4936
Aromaticity 0.0294117647059
Instability index 56.9441176471
Isoelectric point 9.48931884766
Runs 7
Runs residual 0.0197319434103
Runs probability 0.0371337724278
Amino acid sequence MIGSPSARCRSGPVMLGLRMRKLSLSEVEQFVLE
Secondary structure LLLLLLLLLLLLLEELLLLEELLLHHHHHHHHHL
PRMN -
PiMo -