ENST00000589796.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000589796.1

Source

Gencode19

Same with

NONHSAT054026

Classification

antisense

Length

2048 nt

Genomic location

chr17-:43246172..43248852

Exon number

2

Exons

43246172..43247697,43248331..43248852

Genome context

Sequence
000001 ATGCTGAGGA ATGCAGCTGG GAGGCTGCCA GCAAATGCCA AGGGGCCTCT GGGTCCCAGG CTAGCACCCC ACAGCACCCC 000080
000081 ACAGGGGCAG GCAGGCCTCC AGAGGCTCTC CTGGAATCCA AAAAGCCACT TCCTCGCTAA GCCTCCGGTT TCCCGTCTGC 000160
000161 AAAGTGGCGA TGATCATTCC TGCTGCCCTT CCTGACTGAG CTGTCTGAGG ACCCAGGGTT CCAGGGGCAG GTCTCCCAGG 000240
000241 ATGAGATTTT GCTTTCTCTT GAAACCCATG CGTTCCTAGA ATCTGTTCTG TGTTTCATTG TAGGAGGCTC TGGCCAGGCC 000320
000321 TGGGTGTGGC AGGATAGAAA TGAAAGTTGT CCTGGCAACA CACAAGATTT CATCAACATT TCCATCCCCA GCAGCTCCTG 000400
000401 GGCCAAGCCT CATCTTGCCC AGTGTGGCCT GTCAAGATGA CGGCCTGGAA GAGAAGCCAG ACTGGGCAGC CAGGCCTCTG 000480
000481 CCCCTCCCCT TGCCTGGTGG CACAGCCAGC ACTGGCTCAC TGGGAAAGCT CACAACTCCT CACAGCGATC TGGTATCTTG 000560
000561 AGCGTCAGTT TCTGGCCGAA ACTGGGGGCT CCTGACTGAA CTCCCTCCCA CCTAGAAAAC CTTCTGTGCA GTCTGATTGC 000640
000641 TCCAACACCC ACAGAGCAGG ATTCAGGTAT CCCGGAGACC TTGGGAGGTC CCCATCCAGA GGTCTGCTGT CCTGCCAGGC 000720
000721 TTGGGGCAGC AGGGACTGGG ACCCCACTCA GACCTCTCTG GGGCAAATGT TTTGGTTCTC ACAACAGCCC TAGTGAAATC 000800
000801 AATCCTAGAT ACTCCCATTT GGTCCCACCA AGGCCATTTA ATTTCTCTGT AAAGGGTAAG ATGACACAAA AGAGCCAACT 000880
000881 ATGGAAACGG TGAGGTGGGA GTCTGAACCG ATTTAGCTGT TCTCAGGGCG CACAGGGTGT TGACGGTGGT TTTCATCTGC 000960
000961 CACCTGCCTC CTTGAGACCC AGCTGGCCTG AGTGTGCACG AAATGGGACC TTCTCCTTGG GTCCACCAGG CTGGGAGGCA 001040
001041 CCCCTAGGTA CCCGGCTCCT CATCACAGCG GCAGCCCTCT CGGTTCCACA TCTGGTTCTC CTGACGAAGC CGCTGGTTTT 001120
001121 CGGTCCGGAG CCTCTGGACC TCGGCAGCCA GCTCCTCCAC CTGGCGGCAG GACTGCTGGC CGGTGCACGC CTGCAGCTGC 001200
001201 TGCAGCCTCC TAGTCTCCTC CTCCGCCTGC GACAGCCGCT TCTCCAGCTC CAGGTAGTCT CGCACCAGCT CCTGCTTGCT 001280
001281 GCGGCCCTGC AGGCTCTCGG TGTGGAAGCG TTCGTAAGTC TCAGAGAAGT CCTTCCGCTG GAACTCACCG TGCGCTCGGC 001360
001361 CCCGCCCATC ACTGTCCCCG GCCTCACTCT CCCCACTGGA ACCTGGGTGG GAGATCCCAT GGGGCACATC CAAGTTGGGC 001440
001441 TCCTCCGGGT CCCTGTCATT CATCAGGAAC TGGGTGGTGT TGTAGGGGGC CACGGGCTGG CCTTTGGCGA ACATCTCTTC 001520
001521 GCGGACCCGG GAGGCCCTCT GGCTCTGCCT CTCATCCCGC TGTTGTTTCT CAGCCCAGCT CAGCTCCAGG TAGGGTCGCC 001600
001601 AGTGCCTTTT GCGCTTCGAT GGCCGCCGAC GGTGTTTCTT CCGGGCCAGC ACAGCCTCCG CTGAGCAGCC CCCTGGGCTC 001680
001681 TGGGTCCGGG GACTCCTACT GTTCCAGCCC AGGCCACCGA CAGCCCCAGC AAGATCTTCA TCCTCTGAGT GGCTCTCCAT 001760
001761 CCGCGGTGTC AGGGGCAGGG AACCACCAGA GTCATGACGC TCAGGGGGTG TTTGGGGGCT CCCCGGGGCA CCAGAGGTCT 001840
001841 AAAGAGAGGG AGGAGGAAGA AGGATGGATC AGACAGCCTG TCCTTGGAGG TGGAACCTTT CCCTCTCTAC CTAGCCTGAA 001920
001921 GCCTACCTTC CTACACTCAG CTAACTTGGT CACTCTTAGC CCCTCAACCT TTTGGAACCA TTTGTTTACA AAGAGACCTG 002000
002001 TCTACTGTCT GTCCCCCAAC CTTCCCCAAG TAAACTCATG GTGAGAGC
[back to top]

Predicted Small Protein

Name ENST00000589796.1_smProtein_1418:1663
Length 82
Molecular weight 8539.9981
Aromaticity 0.0740740740741
Instability index 64.7
Isoelectric point 6.96295166016
Runs 15
Runs residual 0.0430054778841
Runs probability 0.0365306482954
Amino acid sequence MGHIQVGLLRVPVIHQELGGVVGGHGLAFGEHLFADPGGPLALPLIPLLFLSPAQLQVGS
PVPFALRWPPTVFLPGQHSLR
Secondary structure LLLEEEEEEEELEEELLLLLLLLHHHHHLLLEEELLLLLLLLLLLHHHLLLLLLLLEELL
LLLLLLLLLLEEELLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL
LLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiii
iiiiiiiiiiiiiiiiiiiii