ENST00000589796.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000589796.1 |
Source |
Gencode19 |
Same with |
NONHSAT054026 |
Classification |
antisense |
Length |
2048 nt |
Genomic location |
chr17-:43246172..43248852 |
Exon number |
2 |
Exons |
43246172..43247697,43248331..43248852 |
Genome context |
|
Sequence |
000001 ATGCTGAGGA ATGCAGCTGG GAGGCTGCCA GCAAATGCCA AGGGGCCTCT GGGTCCCAGG CTAGCACCCC ACAGCACCCC 000080
000081 ACAGGGGCAG GCAGGCCTCC AGAGGCTCTC CTGGAATCCA AAAAGCCACT TCCTCGCTAA GCCTCCGGTT TCCCGTCTGC 000160 000161 AAAGTGGCGA TGATCATTCC TGCTGCCCTT CCTGACTGAG CTGTCTGAGG ACCCAGGGTT CCAGGGGCAG GTCTCCCAGG 000240 000241 ATGAGATTTT GCTTTCTCTT GAAACCCATG CGTTCCTAGA ATCTGTTCTG TGTTTCATTG TAGGAGGCTC TGGCCAGGCC 000320 000321 TGGGTGTGGC AGGATAGAAA TGAAAGTTGT CCTGGCAACA CACAAGATTT CATCAACATT TCCATCCCCA GCAGCTCCTG 000400 000401 GGCCAAGCCT CATCTTGCCC AGTGTGGCCT GTCAAGATGA CGGCCTGGAA GAGAAGCCAG ACTGGGCAGC CAGGCCTCTG 000480 000481 CCCCTCCCCT TGCCTGGTGG CACAGCCAGC ACTGGCTCAC TGGGAAAGCT CACAACTCCT CACAGCGATC TGGTATCTTG 000560 000561 AGCGTCAGTT TCTGGCCGAA ACTGGGGGCT CCTGACTGAA CTCCCTCCCA CCTAGAAAAC CTTCTGTGCA GTCTGATTGC 000640 000641 TCCAACACCC ACAGAGCAGG ATTCAGGTAT CCCGGAGACC TTGGGAGGTC CCCATCCAGA GGTCTGCTGT CCTGCCAGGC 000720 000721 TTGGGGCAGC AGGGACTGGG ACCCCACTCA GACCTCTCTG GGGCAAATGT TTTGGTTCTC ACAACAGCCC TAGTGAAATC 000800 000801 AATCCTAGAT ACTCCCATTT GGTCCCACCA AGGCCATTTA ATTTCTCTGT AAAGGGTAAG ATGACACAAA AGAGCCAACT 000880 000881 ATGGAAACGG TGAGGTGGGA GTCTGAACCG ATTTAGCTGT TCTCAGGGCG CACAGGGTGT TGACGGTGGT TTTCATCTGC 000960 000961 CACCTGCCTC CTTGAGACCC AGCTGGCCTG AGTGTGCACG AAATGGGACC TTCTCCTTGG GTCCACCAGG CTGGGAGGCA 001040 001041 CCCCTAGGTA CCCGGCTCCT CATCACAGCG GCAGCCCTCT CGGTTCCACA TCTGGTTCTC CTGACGAAGC CGCTGGTTTT 001120 001121 CGGTCCGGAG CCTCTGGACC TCGGCAGCCA GCTCCTCCAC CTGGCGGCAG GACTGCTGGC CGGTGCACGC CTGCAGCTGC 001200 001201 TGCAGCCTCC TAGTCTCCTC CTCCGCCTGC GACAGCCGCT TCTCCAGCTC CAGGTAGTCT CGCACCAGCT CCTGCTTGCT 001280 001281 GCGGCCCTGC AGGCTCTCGG TGTGGAAGCG TTCGTAAGTC TCAGAGAAGT CCTTCCGCTG GAACTCACCG TGCGCTCGGC 001360 001361 CCCGCCCATC ACTGTCCCCG GCCTCACTCT CCCCACTGGA ACCTGGGTGG GAGATCCCAT GGGGCACATC CAAGTTGGGC 001440 001441 TCCTCCGGGT CCCTGTCATT CATCAGGAAC TGGGTGGTGT TGTAGGGGGC CACGGGCTGG CCTTTGGCGA ACATCTCTTC 001520 001521 GCGGACCCGG GAGGCCCTCT GGCTCTGCCT CTCATCCCGC TGTTGTTTCT CAGCCCAGCT CAGCTCCAGG TAGGGTCGCC 001600 001601 AGTGCCTTTT GCGCTTCGAT GGCCGCCGAC GGTGTTTCTT CCGGGCCAGC ACAGCCTCCG CTGAGCAGCC CCCTGGGCTC 001680 001681 TGGGTCCGGG GACTCCTACT GTTCCAGCCC AGGCCACCGA CAGCCCCAGC AAGATCTTCA TCCTCTGAGT GGCTCTCCAT 001760 001761 CCGCGGTGTC AGGGGCAGGG AACCACCAGA GTCATGACGC TCAGGGGGTG TTTGGGGGCT CCCCGGGGCA CCAGAGGTCT 001840 001841 AAAGAGAGGG AGGAGGAAGA AGGATGGATC AGACAGCCTG TCCTTGGAGG TGGAACCTTT CCCTCTCTAC CTAGCCTGAA 001920 001921 GCCTACCTTC CTACACTCAG CTAACTTGGT CACTCTTAGC CCCTCAACCT TTTGGAACCA TTTGTTTACA AAGAGACCTG 002000 002001 TCTACTGTCT GTCCCCCAAC CTTCCCCAAG TAAACTCATG GTGAGAGC |
Predicted Small Protein
Name | ENST00000589796.1_smProtein_1418:1663 |
Length | 82 |
Molecular weight | 8539.9981 |
Aromaticity | 0.0740740740741 |
Instability index | 64.7 |
Isoelectric point | 6.96295166016 |
Runs | 15 |
Runs residual | 0.0430054778841 |
Runs probability | 0.0365306482954 |
Amino acid sequence | MGHIQVGLLRVPVIHQELGGVVGGHGLAFGEHLFADPGGPLALPLIPLLFLSPAQLQVGS PVPFALRWPPTVFLPGQHSLR |
Secondary structure | LLLEEEEEEEELEEELLLLLLLLHHHHHLLLEEELLLLLLLLLLLHHHLLLLLLLLEELL LLLLLLLLLLEEELLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiii iiiiiiiiiiiiiiiiiiiii |