ENST00000589259.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000589259.1 |
Source |
Gencode19 |
Same with |
NONHSAT053958 |
Classification |
intergenic |
Length |
2025 nt |
Genomic location |
chr17-:42723732..42727717 |
Exon number |
3 |
Exons |
42723732..42724072,42724653..42724754,42726136..42727717 |
Genome context |
|
Sequence |
000001 ACGGAGACAG GGTTTCACCA TGTTGGCCAT GCTGTTTTCA CCATGTTGGC CGGGCTGTTT TCGAACTCCT GACCTCAGAT 000080
000081 GATCCATCTG CCTCCCAAAA TGCTGGGATT ACAGACGTGA GCCACCTCAC CCGGCCCTAC TATTGGATTT TTAAAGACAG 000160 000161 ATATTTAAGA ACATTCTTTG CTAGAACTGA GGACAATTTA AACTTATTCC ATTCAAGAAA ACTTAGTGCA GAATGCAGAC 000240 000241 TTTCCCTTTC AAGTATATGT AAAAGTTAAC TTCTTTTTTT TTCCACCTCT GGAAGACAAT GTACAATGTA GTACTCTTCA 000320 000321 GATACACTAA TGAGACCCTT TTTATACTTT AACAGGGACG TAAACATTTC CTTTTGTAAC AAAAATAAAT TATGGGTTTC 000400 000401 ATTTTAAAAA GCCTATCCCC AAGAAATGTT TTGAGTGTTA ATCTAAGTAA GATTTCATTA TTCTCATAAG TAAAACTTTG 000480 000481 AGTTCAAATA AAGTTTTGAT TTTTTTTTTG ATAATTGAAG GTATATGTAG GGGCTCAACC TAAATGCCAG GGAATTAACC 000560 000561 CTCCATAGGA AGTAATCATA TAATTCTAAG TCAGTATATA ATTGAATTGA TGTAGGATTT TTAAGTATTC TCTCAACTAT 000640 000641 ATTAAATGAA TTGTTTTTCC AGTTTTCTAG TGGTCCAAAA ACTTAAATAG GCTGCAAATC TGCTGTGATT CAAACCGTGC 000720 000721 AATTCCTCAC AGGCATCTCT GACTTGAGGG ACTAAGTTCC TGTAATTATG TGTCCTGAAA TTAACTGGGT TGCCAGATAG 000800 000801 GTTTTCTCAA CCTTTAATAG CTTGTTGGAA GGCTTACAGA ATGCTCTTTA TTAGAAATAT TTGGAACTAC TTCCCCCCTT 000880 000881 TTGGATACTC AAATTAGTGT TTTTCTAGTT CTCTGGCATA ATTTGTATAG CTGCTTCCTT TGTAGAAAGT AAGCTTATGT 000960 000961 TCTGCTTTTC CCTTTCTGGT TGGCTGGAGT GCTAGGTCAC TCTTATCTGT GCTCTAGGAA ACTTTTAGAT TTCTACTTAG 001040 001041 CTTAGGATGA CACCCTGAAA GATTTAGGGT CTGCTTCTGT TTGGGTTAGG GGGTAGACAC TTGAATTCAT TGGTCTTTTT 001120 001121 TTTGGCTCAC TGCAGCCTTG ACCTCCAGCA CTCAAGGGAT CCTCCCACTT CAGCCTCTAG AGTAGCTGCA ACTATAGGTG 001200 001201 CCTGCCACTA TGCTCACTAA TTTTGTGTAT TTATTGTAGA GACAAGGTCT TACTGTATTC CTAGGCTGGT CTCGGACTCC 001280 001281 TGGACTCAAG GGATCTTCCT TCTTCAGCCT CCCAAAGTGC TAGGGTAACA GGCATGAGCC ACCATGCCCG GCCAAATAGA 001360 001361 TTGGTTTTTA TCAAAGATGC TGTAATATTA ATATGCATCT TCCTGCTATC CCTTCAAAAG TGAGAATTAA TGTTGTTTTC 001440 001441 TTTTCTTTTC TTTTTTTGAG ATGGAGTCTC TCTCTGTCAC CCAGGCTGGA GTGCAGTGGC GCAATCTTAG CCCACCGCAA 001520 001521 CCTCTGCCTC CCGGGTTCAA GCAATTCTCC TGCCTCAGCC TTCCGAGTAG CTGGGATTAC AGGGTCTTGC TCTGTCACCT 001600 001601 AGGCTGGAGT GCAGTGGTGT GATCACAGCT CACTGGAGCC TCGACCTCCT GGGATCAAGC GATTCTCTCA CCTCAACCTT 001680 001681 TGAACTTCTA GATAAGTGGT TCTCAAAGTG TGGTCCTTCA ACCAACAGCA TCATCACCAC CCAGGAACTT ATTAGAAATG 001760 001761 GAAGTTCTTG CACCCTGCCA AAACCAGAAA CTGCGGATGG GTCCCAGCAA TCTTTATTTT AACGACTGTT AAAATCAGAA 001840 001841 TCAAGTGATT CTGATGCAAA CTTAAGTTTG AAAACATTGT TCTATTAAAA GTAATGGCAA AAACCGCAAT TACTTTTGCA 001920 001921 CCAACCTAAG AGCTCTGCAC TGTTCAATAT GGTAGCTTCT AACTATTGAA TTTTTTAATG CTATTATCTC CTTTATTCAA 002000 002001 AAATAAATAT TTCACTTTGA TTCAA |
Predicted Small Protein
Name | ENST00000589259.1_smProtein_1460:1621 |
Length | 54 |
Molecular weight | 5914.7904 |
Aromaticity | 0.11320754717 |
Instability index | 65.3867924528 |
Isoelectric point | 7.83538818359 |
Runs | 11 |
Runs residual | 0.047284859641 |
Runs probability | 0.0367667132373 |
Amino acid sequence | MESLSVTQAGVQWRNLSPPQPLPPGFKQFSCLSLPSSWDYRVLLCHLGWSAVV |
Secondary structure | LLEEEEEELLEEEELLLLLLLLLLLLLEEEELLLLLLHHHHHHHHHLLLLEEL |
PRMN | - |
PiMo | - |