ENST00000585065.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000585065.1

Source

Gencode19

Same with

lnc-VEZF1-1:1,NONHSAT054916

Classification

intergenic

Length

4722 nt

Genomic location

chr17-:56066405..56072211

Exon number

2

Exons

56066405..56067157,56068243..56072211

Genome context

Sequence
000001 CTCATGCTTC CATAATAGTT CTGGGATAAT TCTAAACACA AGCCATTTTT CTAAGGAGAG TCCACATTAG AGAGGTCTTT 000080
000081 GTTTTGTATT CAAGATGATT AAAATTATGA ACTGGGAAGT TAGTCCCTGG GGTGTCCTGG CTGGCCTTTG GAAATCTTCA 000160
000161 CTACATCTTT CTGGGTTGGA ATTCTCACCA CAGCCTGAAC GTGGGGCTGT ATCTGAGCTG TCTCTGAGTG CTGTCCATTT 000240
000241 GATATATCGA GTACTGGGTG TTTACCAGGG CTCTTCAAGC CACTGGGAGA AACAGCTAAA GAGTAACCTA CTGATTTGAG 000320
000321 ATGTGGATTT GTGCCCCATC CCTTTCTCCT TGTTTCCCAC AGGAGTTTTA TCTCAAACTC CTAAGCCATT TTTAAGGAGA 000400
000401 TCACTGGAAC AAACTCCAAA CCTACCCTCT AATAGTCAAG TTTACCTGAA TTTTCTCAGT TCTCTCGGGA GAAGACTAAT 000480
000481 CACACATTGT AGTACCAACT TGGACTCTTC ATGTGCTTTT CTTAACTGAT TAGAGTTAAC ACCTCAGCTA AAGTGTATAG 000560
000561 AACATACATG GGGCTTCATC AGGCTTCAGA ATCAGTTTCA CTAGATGTGC TATGTAGGAG GCCACGGAAA AATTACTGTA 000640
000641 GTAGTAAAAG TTATCAGTTC TGATGTAAAC AATCATTTTG TCCCATATTA TAAATAAATT GGCCTGAAAA TATCTTTTCA 000720
000721 TATGTGAGGA ATAAGTATAT GATGCCTTTC TCCTTTAAAG TATGAACTGC TAAAAGACAG GGATAACGTG TATTCTGTAT 000800
000801 TCCAGCAGCC ACAGTGTGTT TCTGGTCTTT GTACCAGGTG CTCAGGAAGT GTTTTCACTG GCTTGGGTTG ACTACTTGCC 000880
000881 ATCTGCTCTC TGAGCATTCA TTTCTGAATG AAAGGGGAGA AAGTGAAAGG AGAGGTGGGA AGAAAGAGGA AGCTGCAGAA 000960
000961 ATACGAGGAA ACAGCTGGAG GAGGGAGGTG AAGTTGAGGA GGTAAGGTCA GTAAAACAAA AAGCTAGCAG AGGGCAGGGT 001040
001041 CAGGCCCTTG GGGTAGAGGG CTAATTAACT TCTGTCAGCT AGTTGAATAG AGCCTTGTGT GCTTTGTTAG AGACCAAAGG 001120
001121 TACTTCAAAG GAAAAAAATC TAGATTCTTC CCTGTGTACC TTAATAATTG TTCATCAGGT CAAAATCTAT CCTGTCCTCT 001200
001201 AGGAATTCTG GTCTTCCCTC AGGCCTAGCA GAGAGCTTTC TGCCACTACT CAGGCAACCA AGGGTGAAGT GCTTCAAGTA 001280
001281 GTATTTGTGG ACAGCAGCAG GTAAGCTTGA TGTGTTATTC ACAGCTTAAA GAGTAGATGC TGAGTACAGC TGTTGTCCAT 001360
001361 GTGTAGAGCT TTTAATAACC AGCGCAGCAG GCCCCTTCAC CTGCTTTTAT GCCTGGACCA GATGACTGAA TGTAGAACTT 001440
001441 TAGGCACTTT TTTTTTTTTT TGAGACGGAG TCTCGGTTTG TTGCCCAGGC TGGAGTGCAG TGGCGCAATC TCGGCTCACT 001520
001521 GCAAGCTCTG CCCCCCGGGT TCACGCCATT CTCTTGCCTC AGCCTCCCAA GTAGCTGGGA CTACAGACTC CCACCACCAT 001600
001601 GCCCGGCTAA TTTTTATATT TTTTAGTAGA GACAGGGTTT CACCGTGTTA GCCAGGATGG TCTCAATCTC CTGACCTGGT 001680
001681 GATCCACCTG CCTTGGCCTC CCAAAGTGCT GGGATTACAG GTGTGAGCCA CCAGATCGGC CCTTTAGGCA CTTTCTACTT 001760
001761 CTCAAGGTCA AGAAACATCC TTTAAAAAGT TAATTCCCTT TTCTGGAGCC TAAGCCAGAT CTTATCTAGG CCTTGTGTTG 001840
001841 CCATCTGTTA GCATTGATTT CTGGAATGGA GCAGCTTTCT CAAAGTTTGG TCTTGCTAGT CATGAGGTCA TGTCAGTGTC 001920
001921 TTAGGTCACT GCTGCTCACC TTCCTTACCC AGGGAGTATA CTGCATAGGT TTCTGAACAC CTGTTTTCAT TATTCACTGT 002000
002001 TCCTCTCACT GCCAAGAATG GAGGGACCCT CAGTTGAAGA TCAAATTGAC TCTGAAGAAA AACTGGAGAT GTTTCTCTTG 002080
002081 GAGTTTGGAT AGAGTATTCA CTTGATAACA TGTTTTTCCC CTGCCTTGCT CTTCACAAGA ACATCTGGCC AGGCATTAAC 002160
002161 AATTAGTAAA TTTTTTTGCA TATGAACAGT ATTTTTCTGG TCATGTAGAT GGGTGCACAT GACACTAAAC AGCATTGTTT 002240
002241 AGTGTTATCC CTCTTAACTG GTGGGTTGTA TTTGGGGTGG AGGCTGTAGC CGAGGAGAAG ACATTCACCT CTGTACTCGA 002320
002321 GAAACTTTGT GTAGGAATTT AGTTTATTTT TTTATTTTTT TTAATTTTTT ATTTTTTACT ACTTTTACTG TTAGCACAAT 002400
002401 GCTATAATTG AGCTAATCTT TGTAGTTTGG TGCAGGACCA CCAAGTTTGT GTGACCCATT ACCTACTTTT TCCATGCTCA 002480
002481 GCCATTACCC TGTCCTGGGG CATCTGAGGG CAGTAAGGAA CAGGTGTCCA AAGGAGGAAT GTTGGTGCCT ATGAGTATGT 002560
002561 TTTCCAGTTG TATTGAATTT CTTACTTGGT GTATTTTTGA CTTGTCTTAG TTTCTTTCCT TGTGGTCTAT GCTATTTTAC 002640
002641 TTGCGATTTG TTGGATATTC TCCCTGTCAT TAAAGAGTTG TAAAATGGAA GTTAGTTTCT CTATGCAAAT GCTTTAATGG 002720
002721 ATGAAGCTGA TAGGTTTAGC ATTGATTTTT GCTGGTGTCC TTCAACAAGC ATGAAGGTGA TAAATGTGTT TCCATGGCTT 002800
002801 TAGACTCATT TTTGAAGTCT TGGATTGTGT GAACATTCTT AGAAACAATA AAATGTTTTA ATTAAAAGCC CTCGACTACC 002880
002881 AGCTGAATTC AGTGTCTACT AGGAAAATGG GTAGATTTGT TACATTGTCC CTTTGCTCTC TATGACTTTG TTCCAGTTGT 002960
002961 CAAGGAACTT AAATGGGTAT TCAGGAAAAA GAATTCTTGT TTCCCTTTCC TCACCTTGCC AGTTAAATAA CTCCTGGTGA 003040
003041 CACTTCAGGT GGTAGAATTG AAACACAAAC CTGACTTCTG ACCACATGGG TCAAAGGCAA AAGGCAAATG GCTTCAAAGC 003120
003121 CCTTAGTGTG CTTATCCAGT TCAGGCAGTG AGGAGATAAC CTCTGCTTTC CTCCCTGAGG AGTTTGGAGT ATTTAAGGGG 003200
003201 GGATGGGGGG GGTGTCACTT TGAAAATATG TTGCTTTTTC TCCTGATTGT ATTGAGGCTG ATATGGAAGG GTTATTTCTT 003280
003281 TCTGGCCAAT ACTTTTTGGT ATTTCTAAAT ATTGCAATCT TGATTTTTAC TATTAAATTT GTTAATTGTC AGTTCTGGCT 003360
003361 TTTTTGCATA AAGAGTTGGT CCATTAACTT GCCAATTTGA AGCTTCTAAC TAGATATTCC CTACTGAAAG TTTTGGATTT 003440
003441 GTTTTTAGTT TGTGGAGCAG TCTTAGCTGG GGACAGGTAA TTGACAACGG CAGAGATACT TTCTTTTCCT AGGATTCTAA 003520
003521 GTCTGTAATC CACATCCTCA ATGTATTCAC AGGACTTTAA AATTCTCTCC AAATGAGGAA GGAAATATCC TGTTGCTTTC 003600
003601 TAATGTTTAC TAAAAGTTGT GTTTAGAACA ACAGATTTTA ATAGGCATCT TCCTTTGTTA TGTGTCATTA GCCCTTTGCC 003680
003681 CGTTTACCTT AGGGCTCTTT GAAGGAGAAA TGGATGGGAG AAAACCTGTC ACTTGGCGAA AGTAAAAGGG ATAATTAACT 003760
003761 GGCTCAGAGC TTATGTGCAG AGTTCCAAGC CCCAAAGTTA ATCTAGAACC ACTCGATAAC ACCAATAAAA ATATTTATTT 003840
003841 CACATCTGTT ATATATCTGG AAAATGTTCT AAGCATCTTA CACATATTTC TCATTAAATC CACAGGTGAC CATTGTGAGG 003920
003921 TAGATATTTT GTTCTAATTT TCCAGATGAG GAAGCTGAGA CCCTAAAAGG CTGACCGGTT CCCTGATGTG TTACCTGCTT 004000
004001 CTGCTACTGA TCCAAACTGC AGAACTTCTC ATTCATCCCC AAGGCCTCCA GGCAGTATCC AATGGGGAAT CAGCTCTAAA 004080
004081 AGGAACCAGA CCAACGTTTT CCAGCCCCTT CATTCTGGTG ACTGAGGGGA GGAAAGAATG GGAGGGGGTA TTCTTGTCTA 004160
004161 GTGGATGGAA AGGAAACACA CTGTCAAATT ACTATATCTC CTTGGTTTTC TATTACAGTA GAATTCTCCA GCCATATTTT 004240
004241 TATTGTCTAT GGGGGAAGTT GGAGATGGTG ACCTTGATTA GAAGTGTCTG GAGGGGGATA AATGGAGGGG ATAAGATTCA 004320
004321 GTTGGTTTTG GAAAATGTTA AAGTCTTAAA ATAATGCGTC CATCTGAAGA ATTTTTTCTA AAACCAGAGT TTATAAAAAT 004400
004401 ATCACTGATA CAGCCTGCCC CCTCATTTCC CTGCCACAGG AGATGTCTTG GACTAGAGAC ACTTGTTTAA TAATAGCTTG 004480
004481 TCTCTGATAT TCCCAGTAGC TTCCCTCTGT GTGAGGAAAG GATAGAAATG TTCAGGACAT CATCATACAG GCTCCTCATC 004560
004561 TACAAAGTTC CAGTAGCAGT GACGCCTACA CGGAAGACTT GGAACTGCAA ACAGGCTGGG GTCACCTCAG TGACATCTGA 004640
004641 CGCTGTCCAA CCAGAAGTTC GATTTTTGTT CTGGGGGTGA AGGAGGAAAC AGACTGTACT AAAGGACTAA AATAATTTGT 004720
004721 CT
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Predicted Small Protein

Name ENST00000585065.1_smProtein_3107:3307
Length 67
Molecular weight 7547.7871
Aromaticity 0.212121212121
Instability index 44.0818181818
Isoelectric point 5.60455322266
Runs 10
Runs residual 0.000907276356379
Runs probability 0.0593976329271
Amino acid sequence MASKPLVCLSSSGSEEITSAFLPEEFGVFKGGWGGCHFENMLLFLLIVLRLIWKGYFFLA
NTFWYF
Secondary structure LLLLLEEEELLLLLHHHHHHLLLLLLLEELLLLLHHHHHHHHHHHHHHHHHHHHHHHHHH
HHEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH
HLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTT
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