ENST00000584382.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000584382.1 |
Source |
Gencode19 |
Same with |
lnc-RNF135-2:1,NONHSAT052863 |
Classification |
intronic(S) |
Length |
2780 nt |
Genomic location |
chr17+:29460200..29465536 |
Exon number |
2 |
Exons |
29460200..29460719,29463277..29465536 |
Genome context |
|
Sequence |
000001 CTTTCTGTTT CTATGAATTT GACTACCCTG GATACCTCAA ATAAGTGGCG TCATACAGTA TTTGTCTTTT TATAACTGGC 000080
000081 TTGTTTCCGT TAGTGTAATG TCTTCAAGGT TAATCCACAT TGCAGCATAT GTCAGAATTT CCTACCTTTT AAAGGCTGAA 000160 000161 TAATATTCTG TTATTTGTGT AAACCACATT TTCTTTATCC ATTCAGGACA TTTGGGTTAC TTTCACCTTT TGGTTATTGT 000240 000241 AAATAATGCT GCCATGAACA TGGGTGTGCA GATACCACTT CAAGACCCTG CTTTCAGTTC TTTTGCATAT GTACCTAGAA 000320 000321 GTAGGGTTGC TGGATCATAT GGTAATTCTA TTTGTAATAT GTTGAGGAAC TGTTTTACTG TTTTCCATAG GTATATGCAC 000400 000401 TATTTTACTT TCCCATCAGT AGTGCACAAG GGTTCCAATT TCTCCATATC CTCATTTACG TTTGTTATTT TGTGTCTTTT 000480 000481 TTTTTATTTT TTTGAGACAG AGTCTCACTC TGTTGCCCAG GCGGAGGTTG CAGTGAGCTG AGATTGTGCC ACTGCACTCC 000560 000561 AGCCTGGGTG AAAGAGCAAG ACTCTGTCTC AAAAAAAAAA AAAAAAAAAA AGGAAAGAAA ATACAGTAGT CTCCCCGCTC 000640 000641 CCCCCACAAC CACTTATCAG CAGTTTTGCT TTCTATGGTT TGTTGCCCAC AGTCAACTGC AGTCTGAAAA TGTTAAATGG 000720 000721 AAAATTCCAG AAATAAACAA TTCATAAGTT TAAAATTGCA TGCTGTTTTG AGTAGTGTGA TGAAATCTCA CACAGTCCTG 000800 000801 CTTCGTCTTA CTTGGGATGC AAATCATCCC TTTGTCCAGT GTATCCACAC TGTGTATGGT ACCTGCCTGT TAGTCACTTA 000880 000881 GTAGCCATCT CATTTATCAG ATTGACTGTC ATGATATTGT AGTGCTGTGT TCAGTTAACC CTTATTTTAT ATAGTAATGG 000960 000961 CCCCAAGGAG GAGGAGCAGT GACGCTGGAA TATTGTTATA ATTGTTCTTT TTTTAAAATT AGTTATTATT GTCGATCTCT 001040 001041 TACTGTGTCT TATAAATTAA ACTTTTTTAT AGGCATGTAT GTGTAGGAAA AAAACATAGT ATATATATAG GGTTCAGTAC 001120 001121 TATCCCTGGA TTCAGGCATC CACTGGGGCT CTTGGAACTT ATGCCCCATG GATAAGGGGA GACTACTGTA TCTTTATTTC 001200 001201 TCCCTTATTC TTGAATGATA GTTTTGCTGG ATATATAGAA TTCTGGACAG TTATGTTTCC CTCAGTATGT TAAAGATACT 001280 001281 ATTTCACTAT CTGTCTGCTA TCATAGCCAT TGAGAATTCA GTTGACATAA TTGCCTTTAT TTTATAGGTG ACATTTTCTC 001360 001361 TCCAGTTGTT TTTTTAGGTC TCCTTTTTGT TGTTTGTTCT GTAGTTTCAC CAAAATGTTT GTAGGTATAT GGATCTCTAT 001440 001441 TCTGCTTTGA GTTTTTGGAC TTCTTGGGAG TGACATTTGT TGTTGTCTAA CAGTTCTAAA AAGCCATTAC CTTCTCAAAT 001520 001521 ATTGTTTCTT TTCTGTATTT CTATTAGTTT TCTTCTGGAA CTACAATTAG ATGTATGTAA TATTGTTTGA GGCTGAGCCA 001600 001601 AGTAGTGTAC TGTGATTAAG TTTACTTTCT GGTACAACTT TTTGTGTCTC CTAAATGTAA TGTCTCATTT AGCCTCATTT 001680 001681 TTTTCATTTG CTTCAGTTTT TATGTAGCTA TTGTTATTTC TTTCCATCAT TAACACGTTC TCAGTACAGT TTTTCACATA 001760 001761 GGGTCAAACC TGTTAATCTG TTCAGTGTGA CCATTTTCCT TGAGGATTTC CTCCCATGCT AGTGTTTAGA ATTGGCTGCT 001840 001841 TGCTATACCA GGTGTGCAGC TATCATCCTG TGTTCTCCCT TCAGCATCAT TTTGGAAATT CCTATTGCTT GTCTCCTGTG 001920 001921 TTGATTCCCT TGTTTTGTGG ATCTCATTCA TTTACAACAC ACCTTCCACT AGCTTGCTGG AAAAAAAAAA AAGTACAAAG 002000 002001 GAGATAAATT TTGAGACCTT GAATGTTTGA GAATGTCTTT ATTCTACCTT TTTTGAAAAA AAAATTGATA ATTTGTCTAG 002080 002081 GTCTTAAGTT CTAATATGAA ATAATTTTTT TTCTCAGAAT TTGGAAAGAA TTTCTCCATT GCCTTTTAGT TTATCACTGA 002160 002161 GATTATTGCT AACCCCAATG CCATTCTGGT TTCTGTTACG TTGTCATCAA TCTGTTTATT TTTTCTTTTC TAGAATCCTT 002240 002241 GGAATTTTTT TTTATTTGTC CTTGCTATTC TGCAGTTCAA TAATAACATG TTGGGATACC AAATGGGTCT TACTTAGTTT 002320 002321 AGAGACTCTT CAAGTCTGGA AAACTTCTTG TGTTATTCTC TGGCAACGTC TTCCTATCTT ATTTATTAAT TTTTTTCTTT 002400 002401 TTTTCACATG TTGGAATTGA TTACTCATGT AATGTTTTAC ATTTTTTTCT TTCATGGTCT TTCTTTTGTT CTTTTTTTGT 002480 002481 AGAAAATATC TTGACTTTAT CTTCCAACTC TTTAATGTTT TCTTTCTTTC TTTCTTTTTT CTTGAGACAG GGTCTGGCTC 002560 002561 TGTCGCCCAG GCTGGAGTGC AATGGCACGA TCTCAGCACT CTGCAACCTC CACCTCCCGG GTTCAAGTGA TTCTCCTGCC 002640 002641 TCAGCCTCCT GAGTAGCTAG GATTACAGGT GCCTACTACC ACACCTGGCT AATTTTTGTA TTTTTAGTGG AGACAAAGTT 002720 002721 TCACTATGTT GGCCAGGCTG GTCTCGAACT CCTGACCTCA GGTGATCCAC CCGCCTGGGC |
Predicted Small Protein
Name | ENST00000584382.1_smProtein_2177:2419 |
Length | 81 |
Molecular weight | 9879.8021 |
Aromaticity | 0.2625 |
Instability index | 58.135125 |
Isoelectric point | 8.75152587891 |
Runs | 10 |
Runs residual | 0.0138157894737 |
Runs probability | 0.0185744568097 |
Amino acid sequence | MPFWFLLRCHQSVYFFFSRILGIFFYLSLLFCSSIITCWDTKWVLLSLETLQVWKTSCVI LWQRLPILFINFFLFFTCWN |
Secondary structure | LLEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEELLLHHHHHHHHHHHHHHHHHHH HHHHLLHHHHHHHHHEEELL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLHH HHHHHHHHHHHHHHHHHLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiTT TTTTTTTTTTTTTTTTTooo |