ENST00000582616.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000582616.1 |
Source |
Gencode19 |
Same with |
lnc-IKZF1-2:2,NONHSAT120583 |
Classification |
antisense |
Length |
762 nt |
Genomic location |
chr7+:51085160..51090687 |
Exon number |
3 |
Exons |
51085160..51085214,51088669..51088982,51090295..51090687 |
Genome context |
|
Sequence |
000001 CTTGATGTTC CTGGCTATGC AGACTCCTTG AGTGACGCCT GTGGGCATAT TACAGGTTGG GTGACCAATC ACCCAATTTG 000080
000081 CCTGCGACTG TCCCAGAAAA CCTTCCCAGC ATAGCTGGGC ACCCTCATTG AAAGGAGGAG GCTGCACTGC TAAGGGGAGG 000160 000161 AGGAGCACCT ACAGATTCAT GCACTGCCTT GCTGGGAAAG CCAAGGACAC CCCTCCATTG CAGGATGTGC TCCCAGCAAT 000240 000241 GCTGTTCTGG AGCCGTTGCT GAACACCCAA AAGAAGACCC AGGAAACTCT ACATCTACTG AGAACCTATG GAGAAACAAC 000320 000321 CAACACTGCA CGCACTGGGA GCCCCTGAAT TTATTGTATT TTCCTCAAGG CAGAGGAACG CATTCTCAGA AGCCAAAAGT 000400 000401 CCCAATGTTA TTATCTCCTC CGCTTGCTGG TTGTGGACCT CGGGCCAGCT TTCAGCATCT CTGGGCCCCA GGCCCTTCAT 000480 000481 GACTCTGCAC AAGATGGAGA GGGTAAAAGA AAAAGATACA GAAACCAGTC ACTGAGATGA CTTTTATAAA GCAGTGAGTA 000560 000561 CAGAGTGTGG TCATGGCCTT CACAGGATCC CAGTCGGTGC AATTCAAAAT GCATGAAAGG CTCAAATGAG ATAGACAATC 000640 000641 GTCTCCAACC TTAATGTAAA GTCACTTGGA TAGCAATGGA AAATTGCAGA TTCATAGGCT GAAAAATGTG ATTCAAGATA 000720 000721 CAGATGTCCT ATGGACCTAC ATTGAGAAAC AGCTTTAGAA TC |
Predicted Small Protein
Name | ENST00000582616.1_smProtein_224:481 |
Length | 86 |
Molecular weight | 9349.447 |
Aromaticity | 0.0705882352941 |
Instability index | 40.3388235294 |
Isoelectric point | 7.70330810547 |
Runs | 9 |
Runs residual | 0.0306595365419 |
Runs probability | 0.0369290859487 |
Amino acid sequence | MCSQQCCSGAVAEHPKEDPGNSTSTENLWRNNQHCTHWEPLNLLYFPQGRGTHSQKPKVP MLLSPPLAGCGPRASFQHLWAPGPS |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLLLEEELLLLLLLLLLLLLL EEELLLLLLLLLLLLLLEELLLLLL |
PRMN | - |
PiMo | - |