ENST00000580996.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000580996.1

Source

Gencode19

Same with

lnc-FAM211A-3:1,NONHSAT145910

Classification

antisense

Length

2166 nt

Genomic location

chr17-:16317838..16320003

Exon number

1

Exons

16317838..16320003

Genome context

Sequence
000001 AAAGCCTTTC AGGGTCTGTC TATATTTTCA GTCTGATTCA GCTCTGAAGG CATCGAATAC TACCTTTGTG TGCCTCAGGG 000080
000081 CCTCTGGGGG CTTCACGAAG GGAGGGAGGC CCCTAGCCTG TGGCCCAGGC TCTCTCCACC ACGCTGCCTC AGGCCCTAGG 000160
000161 CTGGCCTAGG AAGCTCAGCA AACAGCACAA TCTCACCCTC ACAGGAAAAC TGAAACCACA GCCTCCATCA CTTGGCAAGG 000240
000241 GTGGGGCCTC GGTCAGGGTT GGGGAACCCT CATGGGCCCA GTGAGCAGGA TCAGAAAGAA GAAGGAGTCA AAGAGTGGTA 000320
000321 AGGAGACAGA AGGGTGGAGA AGGGGGCAGG GGGCAGGGGG CAGAGAGCAG AGAGGAGCGG CACCAGCAGA GGGAAGTGGA 000400
000401 GAGGGTAGGC TGGGACCAGG CCCTGGGGAC CCGGGTGGGG TATTTTCCCA TGGAAACATG GGAGGTGGGG AGCTGCCTGG 000480
000481 CTGCCTCAGT TTGCAGATGT GACCCACCAC CCTTTCTACA CACACTGGGG CAGAAGGGTG CTCTTTCCGT TTCATACCGT 000560
000561 TTAGCCCATC TGTGTCCCCA ACCAAACCCT GGCCCATTCC TCCAGCCCTA GACTCCCAAG CCCCAGCAGC AACAGTTGTC 000640
000641 TGTCCAGCCC CCACCCCACC TCCTGGGACC CTCACCCACC CTGGCAGCAG AGGAAGGGGT GTGGAGGTCC AGGGAGAGGG 000720
000721 TGCTGGAGCC CCACACAGAC CCTGGCTCCA GGCTGTAGAA GCCAGGAGCC CACTAGGCCT TCCCCACCCC ATCATTCACT 000800
000801 GTCAGGCTTG GAGACCCGGC CCCCTCCAAC GTCCCCAGCA TTGCCCACCG ACTTACCCCG CAGGCTGAGG CCAGGGCGTG 000880
000881 GCGGCTGCTG GGATCCCGGA GCTTCTCAGT AGCAGGGGCT GCGGGAGGAA GTGAAGCCGG GAGGGGCTGC CGGCGCTGAC 000960
000961 AGCAGAGGAG CGGCGGAACC TCCCTCCCCA GCTCTGAGCA CTAAGCTCCA GCAAGCAGGT TCTGGTCTCT CGGTCACCCT 001040
001041 CAGCCCACCT GGCCAGCCGG CACGGTGGAG AACGGGAGCT TAACTCTCCC CTGTCAGGAC AGGCTAGCCA CCAGAGACTG 001120
001121 ACCATCTGGA CACACCCTGC TGCGAATCAG GCTCCACCCC CACCCCTCCC CCTTCTAGCC ACTAAGGTCT CAGGTGGGGG 001200
001201 TGGGTGACAC TCAGAGGCAG CCCTTGGATG CTGGGGACTT GCCACCCATG GAAGCTGCCA TGGATGGGGG ATTCTTCCCC 001280
001281 AAGTCCACTG ACAGCTATCT CCTCCCCTTC TCCACCACAT GCCTTCCAAG CAGCCGTGTG GCCCATAAAT GGGCCTGAGT 001360
001361 TGACCCATGG CAGGGGAGAA AGCTGATGTG GACAGCCCCC AGGGAGAGGC TCAGCCCAGC AGATGCCCCT GGGAACACAG 001440
001441 TCCCACCCAC CCATCCACCC AGCAGTTGGG GGACTTTCCC ACCTCCCAGG ACCTTCTCCC AGCCTCCTGA CCCCAGGACT 001520
001521 CTGATGGCTA AAGTTCCCCT AAAGGTGCTC CAAGCACCAG CCAGCAGGTG GAGACAAGGA GGTGGGCACG CACTGCTAAA 001600
001601 ATCAGACCTC ACCACCAACG GGGCCCTGGT CTGGACTCAG TCTTGGAGCT TGGGGACCCA ACCACCACCG AAGTAGCCCT 001680
001681 AGGAATCTCT CTCCCTCACT CCCAAAACCT GGCATCAGCT CTTCCTCCAA AATTTGTCTT TCTGAGTGGT CCAAGCCACT 001760
001761 ATCACTGCTC CCCTGGGCAA CTGCAGCCAC CTCCAAACTG GTCTCCCTGC TTCATTCTTG CCCCACACTC ATAATCCATT 001840
001841 TCTCCTTATA GCAACTGAAG TGACCTTTTA AAAATGGGAA CCAGGGCCGG GCGCAGTGGC TCACACCTGT AATCCCAGCA 001920
001921 CTTTGGGAGG CCGAGGTGCA TGGATCACTT GAGGTCAGGA GTTCAAGACC AGCCTGGCTA ACATGGCAAA ACCCCATCTC 002000
002001 TACTAAAAAT ACAAATATTA GCTGGATATG GTGGTGGGCA CCTGTAATCT CAGCTACTTG GGAGGCTGAC GCAGGAGAAT 002080
002081 CGCTTGAACC TGGGAGGCGG AAGTTGCAGT GAGCTGAGAT TGTGCCACTG CACACCAGCC TGGACAACAG AGCGAGACTC 002160
002161 TGTGTC
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Predicted Small Protein

Name ENST00000580996.1_smProtein_1385:1675
Length 97
Molecular weight 10411.7695
Aromaticity 0.0729166666667
Instability index 57.778125
Isoelectric point 11.379699707
Runs 11
Runs residual 0.0196520618557
Runs probability 0.0482969600617
Amino acid sequence MWTAPRERLSPADAPGNTVPPTHPPSSWGTFPPPRTFSQPPDPRTLMAKVPLKVLQAPAS
RWRQGGGHALLKSDLTTNGALVWTQSWSLGTQPPPK
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLEEEELLHH
HLLLLLLEEEEEELLLLLLEEEEEEEEELLLLLLLL
PRMN -
PiMo -