ENST00000576234.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000576234.1

Source

Gencode19

Same with

lnc-AC127496.3-5:1,NONHSAT056414

Classification

antisense

Length

3133 nt

Genomic location

chr17-:78940039..78945013

Exon number

2

Exons

78940039..78942745,78944588..78945013

Genome context

Sequence
000001 ATGGGCTGCC TGGCCCTGTC TTGGGGACAT GAAGCCTGGT TTGCCAAGTG GGAACCGAGG GACATGTGCT CCAAGAGACA 000080
000081 CATCCAGGGA CTGCAATCAA TTTCCAAAGG GCCTTTTCTC CTTTCAGCGA TGCTGTTAAG AAAGGCAATG AATCATGTGC 000160
000161 CACAAGAATC TTGAGAGAAC CCACGAGCTT GGGAGCTGGT GACAGACCCC CATTCGGAGC GCTCTCTGCA CAGCTACACA 000240
000241 GCGACCCCGC CCCCGCCTGC CCATCAGGAC GGCTCTGCAG CTGCAAAGGG CGAGTGCTTG GTTCCCAAGG CAGGGCCCAG 000320
000321 CTCCATGGTT CTCCTCGCCT CACTCTCCTC CGTGAGCCTC AGGGACCCGG TGGCCACAGC ACCCTCAGTT CTCCCCAGAG 000400
000401 TTGCTGTTCC CACCTCTGGC TGTGAGGAGC CCGCCTGGCA CAGCTGCGTG AGTGCCGGGC GTCCTTGCCT GAAACAAACT 000480
000481 GCAATTCAGC GCAGGATTCC AGGATTCCAT GGCAACGTGC CCTGTGTTCC GGCCCCGGCT GGGGCTTGGG AGCAGCTGCT 000560
000561 GTGTCATGGG GGATCCACTT GTTTACCGAC AGCCCCAAGG ACCCGGACAT GGTGCCAGCT TCCCATGCCT TGGCCCTGAG 000640
000641 ATCTGGGAGG CCCATCGCGG CCGGTGCTTC CCCCAACCCC ACTGAGCATC TCCTTCCCGC CCTGTGTCCA CCCACCTCCT 000720
000721 GCCCAAGACC CCTGAGTGTT CGTGGGCTCT ACCTGGTGGG ATGCTCTTTG GCTTGTAGAC AGGGGTTGGT TGGCAGCATA 000800
000801 GTGTTCCCTA TCGATGTCCA CATCCTAGTG GGAGCCTGTG ACTACCTGGC TCGGGGGATC CAGGTTGCAG ATGAAATAAG 000880
000881 GTTGGATCAG CTGACTTTAA ACTAGGGTGG TGACCCTGGA GCATCCCGGG GGGCCCAGTG TAATCACAAG GTCCTTAAAA 000960
000961 GTGGAGGAGG GGCCAGCGTG GGGCTCACGC CTGCAATCCC AGAGCTTTGG GAAGCCGAGG CAGCAGGATC CCCTGAATCC 001040
001041 AGGAGTTCGA AGCCAGCCTG GGCAACAAAG TGAGACCGAG TCTTCAAAGC CAGCCTGAGC CACATAGTGA GACTGAGTCC 001120
001121 TGTCTCTACA AAAAGTAAAC AAAAATCAGC CGAGTGTAGT GGTGCACGCC TGTGGTCCCA GCTACTCAGG AGGCTGAGGT 001200
001201 GGGAGGATTG CTTGAGCCTA GGTCAAAGCT GCAGTGGCCA TGATCACACC CCTGCACTCC AGCCTGGGTG ACAGTGAGAC 001280
001281 CCTGTCAAAA AAAAAAAAAA AAAGTGGAGG AGGGAGGCAG GCGAGCCGGG CTCAGTGAGG AGGGCCCAGG CTGCAGTGGG 001360
001361 TGCCAGAATC TATCCTGGAA AAAGGAATGA CATGAACACG AGGGAAGCCC CGAAGGGCCA TTCAGTGCAG CACTGAGTGA 001440
001441 GAGGGGACGT CCTCAAGGAG CCACGAGCCC TGGTGATGAG GCCGTGGTGG GTGGGGGCCC AGCGGGTAGC AGGCGCCCCC 001520
001521 TCTGTGTGCG CAGCGGGGCT GGTTGCTCCA CATATCGCCC TGGTGCATCC GAGTCCCGAG CTGCCACTCC TGCAGGCCTG 001600
001601 CTCTAGGGCG GGGCGGGGCT TGCACAAGCA GCACCTGTAG GTCCCGAGTG CGTGGCTCCC CCAGCCCCAA CACACCCCCC 001680
001681 AGCCCAAGTG GTGGAGTAAA GGTCTCCGCA CATGGCCTTG GGGTGGGGTT AGGACCCCAG TCCCTGCCAC CACCCAACAG 001760
001761 GCAGGGCTTT GGGCAAGCTA CTCAGTGCCC GAGACCCAAT TTCTGGTCGG CAGGTGAGAG GGGCCGGGGG GACAAGAGCC 001840
001841 TGTTCCCAAG CTCTCCAGAA GTCAGGCCCC TGAGGTGGTG CAGTGTGGCT GACATGACCA TCCCCACGGA CCCTTGCCTC 001920
001921 CCACTCGCCC CGCAGGACCA TGCCCAGGCC CGTTGCCTCT GCTGTGGCTT CCACAACATT CCCCCTGGCT CCCAATCCCT 002000
002001 GCACGGACCT TGCTGCTTGG GAAAAACCTC AAGGGACAGG CCATGACCTG CAGAGCAGAG TGTGATCTGG AAACGGGAGC 002080
002081 CTTTCAAGAA TTGGCCAGAC GGGGACAGGC GTGGTGGCTC ACGCTGGGAG GCTGAGGCAG GTGGATCACC TGAGGTCAAA 002160
002161 AGTTCGAAAC CAGCCTGGCC AACATGGCGA AACCCCGTCT CCACCAAAAA TATAAAAATT AGCTGGGTGT GGTGGTACAG 002240
002241 ACCTGTAATC CCAGTTACTT GAGAGGCTGA GACAGGAGAA TCGCTTGAAC CCAGGAGGTG GAGGTTGAGG TGAGCCAAGA 002320
002321 TCGTGCCACT GCACTCCAGC CTGGGTGACA GCGTGCGATT CCATCTCAAA ACAAAAAGCA AACCCAAAAA GAGTTGGCCA 002400
002401 GAGGGATGTG CAGATGTGAT TAGGGCTAAG GACCCACACA GCCCGAGGTG GGTACGGCCC CTAGGCCTGG AAACACTTCT 002480
002481 GGCCTGCATG AGAAGTGGTG ACGGTGGGCG TGGGTCAGAG GCCCTGAACT GGAGGAAGGG GCCACGAGCC AAGGAGAGTG 002560
002561 GGGGCCTCCA GAAGTGGGGA GGAGCGGGGA AGCGGCTTCT CCCCCAGGAA CTCTGACGTG GCCCAGATTT CAATGCAGAC 002640
002641 TTGAATGGGG CCTCTAACCG TGAGAGGATA ACCGTCATTT TAAAGAGAAA GACACGTGTC TGGCCTACGT CACAAGATGG 002720
002721 CTCTTGCCAC ACAGTACGCT CCCTGATGTG GGGTCTGCGC CACAGGGCTG GGGGCACTGC CTGGGAGAAA AGGACCGAGA 002800
002801 CCTTTGCACA CTCGACGTGC CAGGCCCCCT GTGGCCACAG TGCCTGCCTG GAGAGCACCC GGGACGCAGA GCTGCTGGTG 002880
002881 GCCCTGGGGA CAGCAGGGGG GACCCGGGCA ACGTCCCCCC ACCCCCCAGA GCTCTGCTCT GACCGATGCC CCCCTGAGGT 002960
002961 GGGGTGGGCA GTTTCCTTAA AGACACAGCC GCCAGCCGCG GAGTCTGCGC GTGTTGTTTA CTGTTGGTCA CTCTCTGCTC 003040
003041 TTAGCTTCAC ATTACCATTT CGTGTTTTGT CAAAGTCCGT CTCAATTCGC GTTTGGTAAA ATAAATAGAT AATGAGCCTC 003120
003121 TAGGCCGGCG CTC
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Predicted Small Protein

Name ENST00000576234.1_smProtein_608:904
Length 99
Molecular weight 10265.9639
Aromaticity 0.030612244898
Instability index 55.8224489796
Isoelectric point 7.67535400391
Runs 17
Runs residual 0.0344268548541
Runs probability 0.0488689381423
Amino acid sequence MVPASHALALRSGRPIAAGASPNPTEHLLPALCPPTSCPRPLSVRGLYLVGCSLACRQGL
VGSIVFPIDVHILVGACDYLARGIQVADEIRLDQLTLN
Secondary structure LLLHHHHHHHHLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELLHHHHLLL
LEEEEEEELEEEEELHHHHHHHLLLHHHHHHHHHLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH
HHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooT
TTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii