ENST00000574290.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000574290.1

Source

Gencode19

Same with

lnc-MNT-1:1,NONHSAT144948

Classification

antisense

Length

846 nt

Genomic location

chr17-:2278355..2282600

Exon number

4

Exons

2278355..2278665,2278853..2278986,2279907..2280146,2282440..2282600

Genome context

Sequence
000001 GGGCCCCCAG GATTCCTGAG AACCCTCCAG CTGTGTGCGG GGCAGAGGTG GGGGCCTCCA CACCTCTGCT CAGGGCAGCC 000080
000081 TGGATGGCTG GACCAGCTCG TACCATTGAA AAACTTGATG ATGTCAGTGA AGTCCATGTT GTTGTCACGG ATGATCTCTC 000160
000161 GCTTACGCAG CCCAGTCCCA TGTCCCGCCA TCCCTCACCA TTGTCGAGGG TGACCAGGAG AGGCGCCAGC AGATCGCACA 000240
000241 TGCCCTGCAC ATAGCCCACG TCCAGGTGCT CCCACACGTA GCTGAAAGGC AGGGGGAGAG TCACTGTGGC TGTGCCCCAT 000320
000321 TCTTCCCTCC CTCGGGATCC CTGGGAAGAC GTCCTCCAGA GCCACCTGCC GCCCAGAAGT CAGCCTTTCC ACGACCCTAA 000400
000401 GGCTTGACTG GATGCCCGAG GCCACGGAGT AATTGCGAGA GGAGGGCAGT CCTGAGTCTG GAGAGTCGAA CTCCACGGAA 000480
000481 TGCTGCTGCT CCACCACGGC GGTGCCCGGA GTCCCGGGTC CTGCTTCCTG CTCAGCCTCC AACACTGTGG CCACGGGGCA 000560
000561 CCAAGCCAGC TTCTGACCCA GCCAGCCAGG CGGAGAGAAA CAAGCCTCTG GCCAAACATG AAGACACGTC TTCAGCCCTG 000640
000641 CTTGAAGGAA CAGCCCCAGG TCTTCCTGTG GCTACTGAAG GGAAGTAGGG GAGCCAGGGG GCTGAACGCT CAATGGCCAG 000720
000721 TTTGAACTCA GTCTCATTCT AGAAACGCCT GAAGTCATGA GACCGGGAGA ATGGCCTTAG TGTTTTGGTG TGGCTGGGTG 000800
000801 GAGAGAAGCC TAGAGGTTTT AGGAAAAACA AGTTTTGCCT TATTTT
[back to top]

Predicted Small Protein

Name ENST00000574290.1_smProtein_479:724
Length 82
Molecular weight 9065.5327
Aromaticity 0.0617283950617
Instability index 70.6320987654
Isoelectric point 11.297668457
Runs 11
Runs residual 0.00637723816532
Runs probability 0.0263043792456
Amino acid sequence MLLLHHGGARSPGSCFLLSLQHCGHGAPSQLLTQPARRRETSLWPNMKTRLQPCLKEQPQ
VFLWLLKGSRGARGLNAQWPV
Secondary structure LEEEELLLLLLLLHHHEEEHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHLLH
HHHHHHHLLLLLLLLLLLLLL
PRMN -
PiMo -