ENST00000573602.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000573602.1

Source

Gencode19

Same with

lnc-AC127496.3-5:2,NONHSAT056415

Classification

intergenic

Length

2091 nt

Genomic location

chr17-:78942020..78944878

Exon number

2

Exons

78942020..78942745,78943514..78944878

Genome context

Sequence
000001 TTAAGAAAGG CAATGAATCA TGTGCCACAA GAATCTTGAG AGAACCCACG AGCTTGGGAG CTGGTGACAG ACCCCCATTC 000080
000081 GGAGCGCTCT CTGCACAGCT ACACAGCGAC CCCGCCCCCG CCTGCCCATC AGGACGGCTC TGCAGCTGCA AAGGGCGAGT 000160
000161 GCTTGGTTCC CAAGGCAGGG CCCAGCTCCA TGGTTCTCCT CGCCTCACTC TCCTCCGTGA GCCTCAGGGA CCCGGTGGCC 000240
000241 ACAGCACCCT CAGTTCTCCC CAGAGTTGCT GTTCCCACCT CTGGCTGTGA GGTAGGTGGC ATGGCAGAGG GGGCTGGCCT 000320
000321 GGGATGTGGG ATCCTGCTGT GAGCGGCACC AGTGGGGTTT GTCATGCTGA CACTGATGAC AGAGGTGAAC TCATGGTCCC 000400
000401 CCGGCCCTGG GGAGCAGAGA CCCCCTTCCA GGCAGCAGGG CAGGGTAGGT GCATCCAGCA CCCTCCATGG TCGCAGCCCT 000480
000481 CCACCAGGTG GCAGGTCACG CCATGCCTTC TCTGTCCTCA CAGTGGTGTG GCGGGGCTGG GTGTGTAACT CTCGTCCTGT 000560
000561 GTTCCGTGGA CACTGTGCCT GGGTCACACA ACAGCGGATG GAGCCTCAGA GCCCCAGGAG CCCTGTGGCT GCTCCTGCTC 000640
000641 CTGGGACGGC AGGGCCAGCG CAGGGACTGT GGAGCTCAGG AGGAGGGACC CTCTAGCTCA TTATGTAGAG GAGGCGGCAG 000720
000721 TCAGGCGGAC GGGGTGGGCA CCGGAGGGAG GATGGGATGG GCAGGGAAGC CGCCGCAACA GCTGCAGTGA GGTTCTTTCC 000800
000801 CAAGGTGGAG GAGGGGGAAG GACAGGCAGG GCCCATGTGG TTGGGCTCTT CCTCCTCCAG CTCAGGAGCC ACCGACAGGA 000880
000881 CATGGCCTCA GCTGGGTGGC ACCAGGTGAC CAGGCCCAGC TCAGGGTCTG CTCTCCTCTG ATGGTCCAGG CGGGTACCGT 000960
000961 GCAGCCCTGG GACTTGACAT CGGCTGAGCT GTGGCAAAGA GCTGTGTTCT TCCCAGCTCC CAAGCCCTGT GGCACCCGCA 001040
001041 GTTGTGAAGT CCTCAGGTGA CCTCGGACAG TGTCCATTGG GTGCTTCCCT GGTGCCAGTG CTGTTCTGGA AGCTTCTGTG 001120
001121 GTCTTGTTTG GTGCTCACAG CACTCATGCC TGCAGTAACT GTCCCCACAT TAAAGTGAGG GACAGGCTGG GGCTTGGAGG 001200
001201 TGCCATGGTG GCGCCAGTGT CCCAGGGCCA CCAAGCAAAC CACCGTGGGC CCGGCAGCCT GAGCGGCAGG CCTGTATTCC 001280
001281 CTCTCCACCC GCCCTGTCTG GAGGCTGGAC TTGGAGACAG AGGGGCCTCT TGGCTATCTT CTTCCGGGAC CACTCTCCCT 001360
001361 GGCAGGAGCC CGCCTGGCAC AGCTGCGTGA GTGCCGGGCG TCCTTGCCTG AAACAAACTG CAATTCAGCG CAGGATTCCA 001440
001441 GGATTCCATG GCAACGTGCC CTGTGTTCCG GCCCCGGCTG GGGCTTGGGA GCAGCTGCTG TGTCATGGGG GATCCACTTG 001520
001521 TTTACCGACA GCCCCAAGGA CCCGGACATG GTGCCAGCTT CCCATGCCTT GGCCCTGAGA TCTGGGAGGC CCATCGCGGC 001600
001601 CGGTGCTTCC CCCAACCCCA CTGAGCATCT CCTTCCCGCC CTGTGTCCAC CCACCTCCTG CCCAAGACCC CTGAGTGTTC 001680
001681 GTGGGCTCTA CCTGGTGGGA TGCTCTTTGG CTTGTAGACA GGGGTTGGTT GGCAGCATAG TGTTCCCTAT CGATGTCCAC 001760
001761 ATCCTAGTGG GAGCCTGTGA CTACCTGGCT CGGGGGATCC AGGTTGCAGA TGAAATAAGG TTGGATCAGC TGACTTTAAA 001840
001841 CTAGGGTGGT GACCCTGGAG CATCCCGGGG GGCCCAGTGT AATCACAAGG TCCTTAAAAG TGGAGGAGGG GCCAGCGTGG 001920
001921 GGCTCACGCC TGCAATCCCA GAGCTTTGGG AAGCCGAGGC AGCAGGATCC CCTGAATCCA GGAGTTCGAA GCCAGCCTGG 002000
002001 GCAACAAAGT GAGACCGAGT CTTCAAAGCC AGCCTGAGCC ACATAGTGAG ACTGAGTCCT GTCTCTACAA AAAGTAAACA 002080
002081 AAAATCAGCC G
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Predicted Small Protein

Name ENST00000573602.1_smProtein_1547:1843
Length 99
Molecular weight 10265.9639
Aromaticity 0.030612244898
Instability index 55.8224489796
Isoelectric point 7.67535400391
Runs 17
Runs residual 0.0344268548541
Runs probability 0.0488689381423
Amino acid sequence MVPASHALALRSGRPIAAGASPNPTEHLLPALCPPTSCPRPLSVRGLYLVGCSLACRQGL
VGSIVFPIDVHILVGACDYLARGIQVADEIRLDQLTLN
Secondary structure LLLHHHHHHHHLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELLHHHHLLL
LEEEEEEELEEEEELHHHHHHHLLLHHHHHHHHHLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH
HHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooT
TTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii