ENST00000571085.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000571085.1 |
Source |
Gencode19 |
Same with |
lnc-C17orf89-2:1,NONHSAT056448 |
Classification |
antisense |
Length |
805 nt |
Genomic location |
chr17+:79171193..79174088 |
Exon number |
2 |
Exons |
79171193..79171255,79173347..79174088 |
Genome context |
|
Sequence |
000001 CAGGGCTCCA GAGGGCTGAA CTATCCACAC ATATGGGCTC GTGGAGGCAG CTCGGGGCAG CGGCTCCTGC AGTGGGAGCA 000080
000081 TCGCTGAGCA CTGTCCCTGG GAGAGGACGA CCCCAGGCTC CACAGCCAAG CTGCCCTGAG GCTAAGTGTC CCGGGGCCCA 000160 000161 GGGAGCCCCA GCAGCAGCCC CGCACGGTCA GGCCTGGGCC ACGGTGCTGC TCAGTGGTCC CTGCGCGGTC AGCACCTGAA 000240 000241 TGGCTGCTCG CCTGGCTTGG CGTGCCTTCT CCTCCCGGGC CTTCCTCCTG GCTGCCTCTT TCTGCTGGTG CAGGTCCAAG 000320 000321 AGGGTCCCCT CGCCTGACCG CTGCCGCTGC TCCTGCCAAA GAAGCCGGTG CCATGTGGCG TTTACATCTG GAAGACGGAA 000400 000401 TCCAGACCCA GACCAGAGGT TTCCCCACAA CGCCCTGGAG TCCCCTAGAG TTCGTGGAAT CTCAGGGCCA GCAGGGAAAG 000480 000481 TGAAACCCCA CCAGGACCTT GAACCTGCCA TTTCTCTGCT CTACAGAGGA TGAGCCCTAC GTCGCAGGTG GCCAACAGTT 000560 000561 CTGGCGTGGG GGAGACAGCT CTGCCCCCAC AGAACGTCCT CCTGAGACTC TCCAGCCTGG GATGGACCCA GCAGGCGTTT 000640 000641 CCTGACACCC AGGCCCTGAG GACCGCCAGT GAGGACCACC CTGACTGTCC GCGGGGACCC AGGGTCAAGA AGGATGCTGC 000720 000721 ACCCAGAGAC GGGGCCCACG AGCAATCCTA GGCTTTGATT CCACCTGTCC CAGAAACTCA AACCCCTGGG ATTCTGGGCC 000800 000801 AGACC |
Predicted Small Protein
Name | ENST00000571085.1_smProtein_239:532 |
Length | 98 |
Molecular weight | 10924.4682 |
Aromaticity | 0.0824742268041 |
Instability index | 61.1175257732 |
Isoelectric point | 11.0158081055 |
Runs | 9 |
Runs residual | 0.0387552500955 |
Runs probability | 0.0397848829221 |
Amino acid sequence | MAARLAWRAFSSRAFLLAASFCWCRSKRVPSPDRCRCSCQRSRCHVAFTSGRRNPDPDQR FPHNALESPRVRGISGPAGKVKPHQDLEPAISLLYRG |
Secondary structure | LHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLL LLLLLLLLLLEEEELLLLLLLLLLLLHHHHHHHHHLL |
PRMN | - |
PiMo | - |