ENST00000570267.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000570267.1

Source

Gencode19

Same with

lnc-ANKRD11-5:1,NONHSAT144484

Classification

intergenic

Length

2424 nt

Genomic location

chr16-:89281638..89284061

Exon number

1

Exons

89281638..89284061

Genome context

Sequence
000001 ACTTCCGCCT CCAGCCTCCG GGCCGAAGCT TTGGCCTATG GTGCGGGGAG GTAGTAGTTT CTTCCGCGAG GGTGCGGGAG 000080
000081 GGCCCCGGGG CGCCCTTGGG AACCGGGCTG GAGGCAGAGA CAGGCCCGGA GGACCAGGCG GACGTAAGGA TCAGGCCTCT 000160
000161 GGACGCAACT GCGGAGCCGG AACAGACCAG GAGGGCGCGG TTGGGCGGGT ACAGCCAGGA AGTGCTCGTC GCGAGCGCGG 000240
000241 CCCGCGGTTC GGTCACAGCG AGAAGCCCGC GGGTGCTGGG AGTGCTCGGT CTTCTCTCGA TCTCTGCAGG GAGTCACTGG 000320
000321 CCCCGTTCCT TTTTATCTGT CTGAACATCA CGCCGAACTT TTAACAGTTG ATTCCACTGC ATTTTCAATG TGGTATTTTT 000400
000401 TTTTTCTGTA AATGTTCATC TATTTTTCGC TTCAAATATG CGTTTCTGTT ACTTTTCTAA TGTACCGTAG GAGCCAAGAC 000480
000481 CACCTATACT ACGTTGCAAA ATAGCACTGA TACCAGGGGT TCTCCCAAGG TTCATTCAGA AATGTCACAT GATTCCAGTA 000560
000561 ACAATACGAA AAGGTTTTTT TTTTGGAACC AGGCATATTG ATCCTGGAGT TCACATGGAG GAACAAATGT CTCATAACGC 000640
000641 AGACGACGCG GACAAACAAA AGCGCAATGC CCGACAGATG CGAAAACAGC CTCTGTCATT AAAACTGTGT GCTAGTGACA 000720
000721 CATGAACAGG AAACAAATGG AATATCCAGA CATCAACCCA GTAACATGGA AATTTGGTTC ATAAACATAA TTTCAGAGCG 000800
000801 GTGGAACAAA CATGCAGTTT ATAATGAAAG GTGCTAAGAC AAATGGTTAG CCGTCTGAGA AATGATGAAA TTAATTCTGG 000880
000881 ATCTCACAGG GATAAACTCC AAACGGATCA GGAGTCTAAA TGTGAAAAAC AAAACAAAAC CACATGTGAA GTGTTCACGT 000960
000961 GATTTCGTGG CTGATTAAGA AACAAGATGT GCCCAGGAGG TGGCGGTGGC GCACAAGCTT TGACAGGTTG GAGGGTGAGG 001040
001041 GAGTCTCACG CACCATGAGA TTACCCACAG GCTTCGAATT GGGGGTCACT ACTCAGAAAA GAGAAAAAAA TGAGCGTGGG 001120
001121 CGGGGGGCGC GCAGAGAACT CCCAGAGAAG AAGGAGATCA GACAGGGGGA GGGCTGACGT GACTAGATCA CGTTTCTCAG 001200
001201 CAGCCTGACA GGTGTCTGAG TCACAAAGCT CTGAAGGGCA GCAACGGCTT GCAGTCTTTA GAGCCCCAGG ATTTATCTTA 001280
001281 TCTATGGCTA GCAGAGATTG GACACAATTT CACGAAGTAT ACAAAGCAAC CACATGCTAA ATGGTTCAAC ACTATGAGTG 001360
001361 TTTGGGATGT GTTTTATTTA TTATTTATTA ATTTTGATAC GGAGTCTCCC TCTGTCGTCC AGGCTGGAGT GCAGTGGCAC 001440
001441 GATCTTGGCT CACTGCAACC TCCGCCTCCC AGGTTCCAGC TATTCTCCTG CCTCAGCCTC CCAAGTAGCT GGGATTACAG 001520
001521 GTGCCCACCT TGTAATTTTT AGTAGAGACG GAGTTTCACC ATGTTGGCCA GGCTGGTCTC AAACTTCTCA CTTCAGGTGA 001600
001601 TCCACCCGCC TCGGCCTCCC AAAGTGGTGG GATTACAGAC GTGAGCCACT GCAGCCACCG TGCCTGCCCT TGGGATATGT 001680
001681 TTTTTTTTCT TTTAATTTTG TTTTGTTTTG TTTTTTTGAG ACGAAGTCTT GCTCTGTCGA CCAGGCTGGA GTGCAGGGGC 001760
001761 ACAATCTTGG CTCACCGCAA CCTCCGCCTC CCAGGTTCAA GCGATTCTCC TGCCTCAGCC TCCAGAGTAG CTGGGATTAC 001840
001841 AGGCACGTGC CACCAAGCCC AGCTAATTTT TGTATTTTTA GTAGAGATGG GGTTTCACCA TGTTAGCCAG GATGGTATCT 001920
001921 ATCTCTTGAC CTCGTGATCC TCCTGCCTCA GCCTCCCAGA CTGCTGAGAT TACAGGCGTG AGCCACCGCA CGGATATGTT 002000
002001 TTAAGTAACT GAATGTATTA AAATTTGACT TTGGCACCAG CAGGCTATTG TGAATAATGT TGCTTTGAGC ATCGTGTGCA 002080
002081 AAAATATCCT GGACCCTTGT TCTCAGCACT TTTGGATATA TATGCAAAAG TGGAATGGCT GGGTCACATG ATAATTCTGT 002160
002161 CTGATGTTTT GAGAAACCAC TGTCCTGTTT TCCAGAGCTG CTGCACCATT TTGTATTCCC ATGAGCAGGT GCACAAGGTT 002240
002241 CCAACTTTAC CACATCCAGC CAACAGTTAC CTCCTATTTA ATGGCTAAGA GCCATCACCA CCGGGGTAAT GTGATCTCAC 002320
002321 TGTGGCTTTT GTTTTCATTT CCCTAATGTT TAGTTATGTT GATCATCTTT TCATGTTCTT ATTGGCCATC TGTTATCTTC 002400
002401 TTTATTATAA GTCCTTTTCT GAAT
[back to top]

Predicted Small Protein

Name ENST00000570267.1_smProtein_1676:1936
Length 87
Molecular weight 9604.1937
Aromaticity 0.116279069767
Instability index 54.8220930233
Isoelectric point 9.21099853516
Runs 13
Runs residual 0.0115411315515
Runs probability 0.0272852037558
Amino acid sequence MFFFLLILFCFVFLRRSLALSTRLECRGTILAHRNLRLPGSSDSPASASRVAGITGTCHQ
AQLIFVFLVEMGFHHVSQDGIYLLTS
Secondary structure LHHHHHHHHHHHHHHHHHHHLLLLLLLLEEEELLLLLLLLLLLLLLHHHHHHHHLLHHHH
HHHHHHHHHHLLEEEELLLLEEEEEL
PRMN HHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHH
HHHHHHHHHHHHLLLLLLLLLLLLLL
PiMo TTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTT
TTTTTTTTTTTToooooooooooooo