ENST00000569621.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000569621.1

Source

Gencode19

Same with

lnc-SOD3-2:1

Classification

intergenic

Length

2195 nt

Genomic location

chr4+:24661479..24673191

Exon number

2

Exons

24661479..24661666,24671185..24673191

Genome context

Sequence
000001 ATAATGCAAG TGTAAGCTTG GAAAAAAGCA CTACGTGTCT GCTTGCACTC CTGAGCCTCC ACCATTGCTG TGAAAACATG 000080
000081 CCTGGGAGAG CCTGCTGGAA GACAGTACCC AGAGCAGCGC CCCAGTCTCT CCAGTTGACT AGCCAGGACC AGCCTAGATC 000160
000161 TTCTGACAAC TGGATGACCT TCAGATATCA TAAGAAAACA GCCGAAGATT AGATTTTGAT AATGAGAGAG CCCAACGATC 000240
000241 CTGGACCCCT GGCCGGGAGG ACAATAGGGG AAACAGGTGA AACACTGTGT GAGCTGGACC ACCCAGGCTC TCCAACACCA 000320
000321 GGACACCAGA GCATCCTTCC TCCTTCTTCT CTTCTGCTGC GACTTCCTGG AGGCATAGCA GAGTTACAAC TGCTGGCCAT 000400
000401 GTGGAACTTC TCTTCTCCTA TAAGTTTGCT CTGAGATGGA GAGATTGTGC CTGTGGTTCA TTAGGAAGAG CTCTTGGGAT 000480
000481 CAATGCCTGT AATAAGGAAG GGAAGGAATC AGGATTGGCC AGAAGGAGAA GTTGAGCTGT GTTGAAGCCT CAATGGAGAC 000560
000561 CTCAGCCAAT TCTGAGTCAT GTCCTGAAGC TAGAATATGT CCTCTAAATT ATCCCAAGCT GAGATGAGGG AGCTGGGCAT 000640
000641 TTAGCCCTGT ATTAGGCCAT TCTTGCACTG CTATAAAGAA ATAACTATGG CCTGGCGCCG TGGCTCACGT CCTTAATCCT 000720
000721 AGCACTTTGG GAGGCCGAGG CGAGCAGATC ACGAGGTCAG AGTTTGACAC CAGCCTGGCC AATATGGTGA AACCCCAATT 000800
000801 CTACTAAAAA TACGAAAATT AGCCAGGCGT GGTGGCACAT GTCTGTAATC TCAGCTACTC GGGAGGCTGA GGCAGGAGAA 000880
000881 TTGCTTGAAC CCAGGAAGTG GAGGTTGCAG TGAGCTGAGA TTGTGCCTCT GCACTCCAGC CTAGGGAATA AAGCGAAAGT 000960
000961 CTGTCAAAAA AAAAAAAAAA AAGGAAAGAA GGAAATAACT GAGACTGGTA ATTTATAAAG AAGAGGTTTA ATTGGCTCAC 001040
001041 AGTTCCTCAT GCTATACAAA AAGCATGATG CTGGCATCTG CTCAGCTTCT TGGGAGGCCT CAGGAAATGT ACAATCATGG 001120
001121 CAGAAGGTGA CGCGGGAGCA GGCAGTTCAC AGGGCCGGTG CAGGAGGAGA GAGAGAGGCA GGAGATGCTA CACGCCTTTA 001200
001201 AACAACCAGA TCTCCTGATA ACTCACTCTC GTCACAACAC CACCAAGGGA GATGGTGTTA AACCATGAGA AACCACCTCC 001280
001281 ACGATCCAAT CACCTCCCAC CAGGCCTCAC CTCCAACACT GGGGATTTAT AATTCCACGT GAGATTTGGG TAGAGGACAC 001360
001361 AGATCCAAAA TATATCATAC CCCCACGTTG ATCAGTCATT AGATGTGGGC CACCCTAGTT GAGGCAGCTC CCCTCGCTCA 001440
001441 GGTGGTTCCT GAAGCGAGCT GACAGCTGAC GGCTGCATGC CAGAGGTACT GTCAGCAGCT GAAGGAGAGT CTTTTGTGCT 001520
001521 AAAAGCCATC TTAAGCAGCA CAGCACAGCG TCCACCACAT ATTGTGGACA GGTGATATGG TTTAGATCTG TATCCCCACC 001600
001601 ACAATTTCAT GCTGAATTGT AGTCCCCAAT GTTGGAGGTA AGCCCTGGTG GGAGGTGTTC GGGTCGTGGG AGCAGATCCC 001680
001681 TCATGAATGG CTTGGGCCAT CCTCTTGGTG ATGAGGGAAC ACTCACTCTG AGTGTTCACA AGATCTGGTG GTTTAAACGT 001760
001761 GTATGGCACC TCTCCCCACC CCCACTCTTT CTTGTTCCTG CTTTTGCCAT GGGACTCGCA TGATCCCTTT GCCTTCTGCC 001840
001841 AGGACTAAAA GCTCCCTGGA GCCTCCTCAG AAGCTGAGCG ATGTTGGCGC CATGCTTCTG GTACAGCCTG CAGAACCATG 001920
001921 AGCCAATTCA ACCTCCTTTC TTTATAAATT ACCCAGTCTC AGGTATTTCT TTATGGCAAT ACAAGAACAC CAGGGGTTTG 002000
002001 CAGGTAACCC GGGCCCCTGT CCTTGAGGAC ACAGCAGCAA GCCATTGGTA AAGCAAAACT GTCCATAAGG AAGGCTGCTC 002080
002081 CCATGCAGTG TTCATTTGGG CAGCCCAGAA ATCGAGAAAT CCTCGGTCCA TTTCAAGTTT GGGGGAAAAC TTATTTTTAT 002160
002161 CATATTTGAG ATGAATAATA AAAGCAAATC CAGAA
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Predicted Small Protein

Name ENST00000569621.1_smProtein_221:433
Length 71
Molecular weight 7398.41
Aromaticity 0.0285714285714
Instability index 53.4185714286
Isoelectric point 4.73455810547
Runs 7
Runs residual 0.0448373408769
Runs probability 0.0216519040048
Amino acid sequence MREPNDPGPLAGRTIGETGETLCELDHPGSPTPGHQSILPPSSLLLRLPGGIAELQLLAM
WNFSSPISLL
Secondary structure LLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLEELLLLHHHHHHHHHH
HHLLLLLLLL
PRMN -
PiMo -