ENST00000569621.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000569621.1 |
Source |
Gencode19 |
Same with |
lnc-SOD3-2:1 |
Classification |
intergenic |
Length |
2195 nt |
Genomic location |
chr4+:24661479..24673191 |
Exon number |
2 |
Exons |
24661479..24661666,24671185..24673191 |
Genome context |
|
Sequence |
000001 ATAATGCAAG TGTAAGCTTG GAAAAAAGCA CTACGTGTCT GCTTGCACTC CTGAGCCTCC ACCATTGCTG TGAAAACATG 000080
000081 CCTGGGAGAG CCTGCTGGAA GACAGTACCC AGAGCAGCGC CCCAGTCTCT CCAGTTGACT AGCCAGGACC AGCCTAGATC 000160 000161 TTCTGACAAC TGGATGACCT TCAGATATCA TAAGAAAACA GCCGAAGATT AGATTTTGAT AATGAGAGAG CCCAACGATC 000240 000241 CTGGACCCCT GGCCGGGAGG ACAATAGGGG AAACAGGTGA AACACTGTGT GAGCTGGACC ACCCAGGCTC TCCAACACCA 000320 000321 GGACACCAGA GCATCCTTCC TCCTTCTTCT CTTCTGCTGC GACTTCCTGG AGGCATAGCA GAGTTACAAC TGCTGGCCAT 000400 000401 GTGGAACTTC TCTTCTCCTA TAAGTTTGCT CTGAGATGGA GAGATTGTGC CTGTGGTTCA TTAGGAAGAG CTCTTGGGAT 000480 000481 CAATGCCTGT AATAAGGAAG GGAAGGAATC AGGATTGGCC AGAAGGAGAA GTTGAGCTGT GTTGAAGCCT CAATGGAGAC 000560 000561 CTCAGCCAAT TCTGAGTCAT GTCCTGAAGC TAGAATATGT CCTCTAAATT ATCCCAAGCT GAGATGAGGG AGCTGGGCAT 000640 000641 TTAGCCCTGT ATTAGGCCAT TCTTGCACTG CTATAAAGAA ATAACTATGG CCTGGCGCCG TGGCTCACGT CCTTAATCCT 000720 000721 AGCACTTTGG GAGGCCGAGG CGAGCAGATC ACGAGGTCAG AGTTTGACAC CAGCCTGGCC AATATGGTGA AACCCCAATT 000800 000801 CTACTAAAAA TACGAAAATT AGCCAGGCGT GGTGGCACAT GTCTGTAATC TCAGCTACTC GGGAGGCTGA GGCAGGAGAA 000880 000881 TTGCTTGAAC CCAGGAAGTG GAGGTTGCAG TGAGCTGAGA TTGTGCCTCT GCACTCCAGC CTAGGGAATA AAGCGAAAGT 000960 000961 CTGTCAAAAA AAAAAAAAAA AAGGAAAGAA GGAAATAACT GAGACTGGTA ATTTATAAAG AAGAGGTTTA ATTGGCTCAC 001040 001041 AGTTCCTCAT GCTATACAAA AAGCATGATG CTGGCATCTG CTCAGCTTCT TGGGAGGCCT CAGGAAATGT ACAATCATGG 001120 001121 CAGAAGGTGA CGCGGGAGCA GGCAGTTCAC AGGGCCGGTG CAGGAGGAGA GAGAGAGGCA GGAGATGCTA CACGCCTTTA 001200 001201 AACAACCAGA TCTCCTGATA ACTCACTCTC GTCACAACAC CACCAAGGGA GATGGTGTTA AACCATGAGA AACCACCTCC 001280 001281 ACGATCCAAT CACCTCCCAC CAGGCCTCAC CTCCAACACT GGGGATTTAT AATTCCACGT GAGATTTGGG TAGAGGACAC 001360 001361 AGATCCAAAA TATATCATAC CCCCACGTTG ATCAGTCATT AGATGTGGGC CACCCTAGTT GAGGCAGCTC CCCTCGCTCA 001440 001441 GGTGGTTCCT GAAGCGAGCT GACAGCTGAC GGCTGCATGC CAGAGGTACT GTCAGCAGCT GAAGGAGAGT CTTTTGTGCT 001520 001521 AAAAGCCATC TTAAGCAGCA CAGCACAGCG TCCACCACAT ATTGTGGACA GGTGATATGG TTTAGATCTG TATCCCCACC 001600 001601 ACAATTTCAT GCTGAATTGT AGTCCCCAAT GTTGGAGGTA AGCCCTGGTG GGAGGTGTTC GGGTCGTGGG AGCAGATCCC 001680 001681 TCATGAATGG CTTGGGCCAT CCTCTTGGTG ATGAGGGAAC ACTCACTCTG AGTGTTCACA AGATCTGGTG GTTTAAACGT 001760 001761 GTATGGCACC TCTCCCCACC CCCACTCTTT CTTGTTCCTG CTTTTGCCAT GGGACTCGCA TGATCCCTTT GCCTTCTGCC 001840 001841 AGGACTAAAA GCTCCCTGGA GCCTCCTCAG AAGCTGAGCG ATGTTGGCGC CATGCTTCTG GTACAGCCTG CAGAACCATG 001920 001921 AGCCAATTCA ACCTCCTTTC TTTATAAATT ACCCAGTCTC AGGTATTTCT TTATGGCAAT ACAAGAACAC CAGGGGTTTG 002000 002001 CAGGTAACCC GGGCCCCTGT CCTTGAGGAC ACAGCAGCAA GCCATTGGTA AAGCAAAACT GTCCATAAGG AAGGCTGCTC 002080 002081 CCATGCAGTG TTCATTTGGG CAGCCCAGAA ATCGAGAAAT CCTCGGTCCA TTTCAAGTTT GGGGGAAAAC TTATTTTTAT 002160 002161 CATATTTGAG ATGAATAATA AAAGCAAATC CAGAA |
Predicted Small Protein
Name | ENST00000569621.1_smProtein_221:433 |
Length | 71 |
Molecular weight | 7398.41 |
Aromaticity | 0.0285714285714 |
Instability index | 53.4185714286 |
Isoelectric point | 4.73455810547 |
Runs | 7 |
Runs residual | 0.0448373408769 |
Runs probability | 0.0216519040048 |
Amino acid sequence | MREPNDPGPLAGRTIGETGETLCELDHPGSPTPGHQSILPPSSLLLRLPGGIAELQLLAM WNFSSPISLL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLEELLLLHHHHHHHHHH HHLLLLLLLL |
PRMN | - |
PiMo | - |