ENST00000569274.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000569274.1 |
Source |
Gencode19 |
Same with |
lnc-CMTM3-1:1,NONHSAT143036 |
Classification |
antisense |
Length |
1790 nt |
Genomic location |
chr16+:66754800..66765688 |
Exon number |
2 |
Exons |
66754800..66755893,66764993..66765688 |
Genome context |
|
Sequence |
000001 AAGCAGTCTG GATTCGTGTT TATTGAAGCC AGTAATTAGA GACATCTTTT TTTCCCAGGA CTAGAAAGCA AGGTTCCACA 000080
000081 TGACTGCATA CTGCACCCGG ACAGAGCCAC ACCCCTGGAC TAAGGCTGGT GGGGGATAAT CTGCAGTCTT ACTTTTAAGT 000160 000161 TAGAAACACC AATAAATTTA GTATACAGAC GACAGTGAAC TTTCACTTAC AGCATTAACA TTGTTAAGGT CATGATGTAC 000240 000241 AGAGCAGTCA CTTTCAACTT TGTTAAATTA ATAAAACATG ACAATGTCTT CAGTTTAAAT ACCGATTTTA AAATGCCAAT 000320 000321 CAAAAAAAAG TGCAAACAAA ATAACAATCT AGCAGCATTA TCTGTTGCAT TTTTAGGAAA GACCAATTCT TGGCTGTTAT 000400 000401 CTTCAGCCAC GTATTCAAAG GTGGGCTTTT CTCTGATTTT TTTTTTTATT TTAAAGACAA AAAGCAGATG TAACCATTAT 000480 000481 AATGTGCATA AATAGTCATA AAATTGTCTT TAACAGTCTA CCATACAAGT GTACTCTGCA AATAAAATGA ATTTTACTTT 000560 000561 AAAAACTAAA GGCTGTTTAT TATTTGGCCT TTGGTTCCAA TGCTTGAAAA CCCCAAAATA ACAAAACTCA TCTCCCTTCC 000640 000641 TCCCACCTCC CAAAAAGAAC CCTGCAGCTC CCCAAAGTTG GTAGACTTTG GCAACCACTG AGCACATGAC ACTATGTATC 000720 000721 AGCTTCTTCT GATACTAGGA GCTTCCACTT CTCATGAGTA AATAAAAGTG GTCTCCAAGA AACCTTCCTT CACAAGACAT 000800 000801 GTCTTAGCAT TTCATCAGTT TTAGTATATT TTATATTGAC ACAAAAAGTG CTTATCAGTT CAAATGATAA AAAATAAAGA 000880 000881 CAAATTAAAA TTTTGCATTA AAATTTAAAA TTATACCATA TTCCTCTTCG GCATGTGCCT TTCCAGGAAT TCTTGTTTCT 000960 000961 GAGGTCACTC ATTTTACTCC CGGGGACTAA GCGACCCCAC CTTTAGTGAG GCCACAAGCT GTTTGGCATC TATTGGTCAC 001040 001041 TATACCACAA TTATCATTCT ACAGTCAGTT TACTGTCATT ACCTAGACAA CCTGGTAACT ACCAACAGGA CCAAATGTGC 001120 001121 AAACGGGCAG GGCATGATTG AGATACTGCC GTGAGCCATG CAGCCTTCGG AAGCTGAGAG ATGCTTCTTC ATTCCAGACC 001200 001201 AGCCCCAAAT CCAACCGGTC TCCTTGCTCC TAGGGATGAC ATGTGATTTG GATACCAAGT GATTCCAAAC ACACCTCTCA 001280 001281 CAGGGCTTGT GCCTCTGGCG CCTGCCTGAC TGCTCTGAAC AACTATCTAA AATCAGCCCA AGCCTGTAGG TATGCCATCT 001360 001361 ATGACTAGCC TGAGTGACAC TCTCCTTGAC TGTGCAGGAG GCAACCCAAA TCCCTGAGAG CTCCTGGCTT TCACATTTCC 001440 001441 AGCCTCTCAC AGACTGCACT CCCCGGCTCC CCCTATTGCA ATTCTTTCCA GTCCGCCTGG GATCTACCAT TTGTCTTCCA 001520 001521 GCATCACCCT CCTGCTTTCC CTGCCATACT TCCTCCATAA CCCCATCACT GCCCTTCCCT TCTTCAGCTG TGTATGTCCC 001600 001601 CTCTAGACAG TGCCATATGC AAGGAACACG TATCATTCAT TTCTGTGTCC TTTGCAGAGA ACCTGAGCAC CTAGTGGGTG 001680 001681 CTGAATAAGG TTTCCTGAAT GAATAATGTA ATTGTTTGTT AAGTCAGGAG GATACTGAAG CCTGAACATC AATCTGCTAA 001760 001761 CACAAGTCTT GTCAGAGACC ACAGCTTCAT |
Predicted Small Protein
Name | ENST00000569274.1_smProtein_1157:1261 |
Length | 35 |
Molecular weight | 3852.4347 |
Aromaticity | 0.0588235294118 |
Instability index | 44.4735294118 |
Isoelectric point | 4.10479736328 |
Runs | 8 |
Runs residual | 0.0491437081162 |
Runs probability | 0.0263645998941 |
Amino acid sequence | MQPSEAERCFFIPDQPQIQPVSLLLGMTCDLDTK |
Secondary structure | LLLLHHHEEELLLLLLLLLLHHHHLLLEELLLLL |
PRMN | - |
PiMo | - |