ENST00000569274.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000569274.1

Source

Gencode19

Same with

lnc-CMTM3-1:1,NONHSAT143036

Classification

antisense

Length

1790 nt

Genomic location

chr16+:66754800..66765688

Exon number

2

Exons

66754800..66755893,66764993..66765688

Genome context

Sequence
000001 AAGCAGTCTG GATTCGTGTT TATTGAAGCC AGTAATTAGA GACATCTTTT TTTCCCAGGA CTAGAAAGCA AGGTTCCACA 000080
000081 TGACTGCATA CTGCACCCGG ACAGAGCCAC ACCCCTGGAC TAAGGCTGGT GGGGGATAAT CTGCAGTCTT ACTTTTAAGT 000160
000161 TAGAAACACC AATAAATTTA GTATACAGAC GACAGTGAAC TTTCACTTAC AGCATTAACA TTGTTAAGGT CATGATGTAC 000240
000241 AGAGCAGTCA CTTTCAACTT TGTTAAATTA ATAAAACATG ACAATGTCTT CAGTTTAAAT ACCGATTTTA AAATGCCAAT 000320
000321 CAAAAAAAAG TGCAAACAAA ATAACAATCT AGCAGCATTA TCTGTTGCAT TTTTAGGAAA GACCAATTCT TGGCTGTTAT 000400
000401 CTTCAGCCAC GTATTCAAAG GTGGGCTTTT CTCTGATTTT TTTTTTTATT TTAAAGACAA AAAGCAGATG TAACCATTAT 000480
000481 AATGTGCATA AATAGTCATA AAATTGTCTT TAACAGTCTA CCATACAAGT GTACTCTGCA AATAAAATGA ATTTTACTTT 000560
000561 AAAAACTAAA GGCTGTTTAT TATTTGGCCT TTGGTTCCAA TGCTTGAAAA CCCCAAAATA ACAAAACTCA TCTCCCTTCC 000640
000641 TCCCACCTCC CAAAAAGAAC CCTGCAGCTC CCCAAAGTTG GTAGACTTTG GCAACCACTG AGCACATGAC ACTATGTATC 000720
000721 AGCTTCTTCT GATACTAGGA GCTTCCACTT CTCATGAGTA AATAAAAGTG GTCTCCAAGA AACCTTCCTT CACAAGACAT 000800
000801 GTCTTAGCAT TTCATCAGTT TTAGTATATT TTATATTGAC ACAAAAAGTG CTTATCAGTT CAAATGATAA AAAATAAAGA 000880
000881 CAAATTAAAA TTTTGCATTA AAATTTAAAA TTATACCATA TTCCTCTTCG GCATGTGCCT TTCCAGGAAT TCTTGTTTCT 000960
000961 GAGGTCACTC ATTTTACTCC CGGGGACTAA GCGACCCCAC CTTTAGTGAG GCCACAAGCT GTTTGGCATC TATTGGTCAC 001040
001041 TATACCACAA TTATCATTCT ACAGTCAGTT TACTGTCATT ACCTAGACAA CCTGGTAACT ACCAACAGGA CCAAATGTGC 001120
001121 AAACGGGCAG GGCATGATTG AGATACTGCC GTGAGCCATG CAGCCTTCGG AAGCTGAGAG ATGCTTCTTC ATTCCAGACC 001200
001201 AGCCCCAAAT CCAACCGGTC TCCTTGCTCC TAGGGATGAC ATGTGATTTG GATACCAAGT GATTCCAAAC ACACCTCTCA 001280
001281 CAGGGCTTGT GCCTCTGGCG CCTGCCTGAC TGCTCTGAAC AACTATCTAA AATCAGCCCA AGCCTGTAGG TATGCCATCT 001360
001361 ATGACTAGCC TGAGTGACAC TCTCCTTGAC TGTGCAGGAG GCAACCCAAA TCCCTGAGAG CTCCTGGCTT TCACATTTCC 001440
001441 AGCCTCTCAC AGACTGCACT CCCCGGCTCC CCCTATTGCA ATTCTTTCCA GTCCGCCTGG GATCTACCAT TTGTCTTCCA 001520
001521 GCATCACCCT CCTGCTTTCC CTGCCATACT TCCTCCATAA CCCCATCACT GCCCTTCCCT TCTTCAGCTG TGTATGTCCC 001600
001601 CTCTAGACAG TGCCATATGC AAGGAACACG TATCATTCAT TTCTGTGTCC TTTGCAGAGA ACCTGAGCAC CTAGTGGGTG 001680
001681 CTGAATAAGG TTTCCTGAAT GAATAATGTA ATTGTTTGTT AAGTCAGGAG GATACTGAAG CCTGAACATC AATCTGCTAA 001760
001761 CACAAGTCTT GTCAGAGACC ACAGCTTCAT
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Predicted Small Protein

Name ENST00000569274.1_smProtein_1157:1261
Length 35
Molecular weight 3852.4347
Aromaticity 0.0588235294118
Instability index 44.4735294118
Isoelectric point 4.10479736328
Runs 8
Runs residual 0.0491437081162
Runs probability 0.0263645998941
Amino acid sequence MQPSEAERCFFIPDQPQIQPVSLLLGMTCDLDTK
Secondary structure LLLLHHHEEELLLLLLLLLLHHHHLLLEELLLLL
PRMN -
PiMo -