ENST00000566949.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000566949.1

Source

Gencode19

Same with

lnc-NOTCH2-1:1

Classification

intergenic

Length

1359 nt

Genomic location

chr1-:120451878..120453236

Exon number

1

Exons

120451878..120453236

Genome context

Sequence
000001 ACATCAAAGA GGGCTATTTA CAAAGGATTA ATTACAAAAG TGTGTGTGCA ATGTCAGGGA CCGACACACA GTTGTGCAGA 000080
000081 AACCCGTGTT AGCATCAGCA GAGCTATTTC CACTTGTGGG CCCAAAAGGC CAGGAGAAGT CACTAGGACC TGGAAGCAGA 000160
000161 GTCCTGTAGA GCAGGTCCCC AACCCCCCGG GCCACAGACT GGATACCTTA GCCTGTGGGG AACCGTTAGG AACCGGGCTG 000240
000241 CACAGCAGGA GGTGAGCAGC AGGCAAGCAA GCATTACTGC CTGAGCTCCA CCTCCTGTCA GATCAGCAGT GGCGTTAGAT 000320
000321 TCTCATAGGA GCATGAACCC TATTGTGAAC TGCATATGTG AAGGATCTAG GTTGCGCACT CCTTATGATA ATCTAATGTC 000400
000401 TGATGATCTG AGATGGAAGA GTTTCATCCC CAAACCATTC CCTGGCCCCA GTCCATGGAA ATATTGTCTT CCACGAAACT 000480
000481 GGTTCCTGGT GCCAAAAAGG TTGGAGACTG CTGCTGTAGA GCAGGCTACC TCAAGAAGAG CTGTGACTTC CTTCAAAGCA 000560
000561 CACAGTGGGC CTTAAGCCCT CCCAGAAAGA AGCTAGGGAA TGAATGAATA CCCTGATCTC ATTTGCTTCA CTGGGCTCTC 000640
000641 TGTTTGCCGA CTCCAAGTGG AAGCCTGCAA ATATGGGAGC TGTTGATTAT AATCTATCAA TGTAAGTCAG CTTTCTGGCT 000720
000721 GGGAGCTTGG TGGAGAAGGA AAGAGAGTGA ATCTGAAGGG GCAAACATAT TACCTAAAAT AACATTCTCC TTCCAACTAT 000800
000801 ATTTCTGAGA AATTTCCACT GGTAACCTGT TATTGATGTG TCTAGGCAGA AAGCATAAAG TTAAAAAAAA GTACGTATTT 000880
000881 AGAATCCTGA CTTCTTTTTC TGATCTAGTA GTGTGTTTCT TCACCACTTT GGCTTTGAGC ACTCAAAGTG CAGACAGTCA 000960
000961 TCAGCAGTGG GATGGATAAA TTCTGGTACA TTCATTGAAA TGAATGCTAC GCATAAATGA AAAAGAGCAA CTTGCAACAA 001040
001041 CACGTAGTAT ATTCATCAAA ATAATGTTGA GCAAAATAAG CCAGACACAA GTAATACATT CTGTATGATT CCATTACATA 001120
001121 AGTTTAGGAA AAACCAACCA ATAGTAAATA GATAATCTGA ACAGTGGCTA CTTTTTGGGA GAAAGGTCTA GACTGAAGTG 001200
001201 AGAGAAAGAA GAATCTTTCT GGAGTCTGAA AGTATCTTGA CCTGGGTGGT GACTACATGA GTGTATATAT ACGTAAAATT 001280
001281 TCATGTAAAA TTTAACTTAA GATTTATGCA TTTGACTTAT GTAAATTATA CTTCAATAAA ATGTTTCTAC AATAACCTA
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Predicted Small Protein

Name ENST00000566949.1_smProtein_332:574
Length 81
Molecular weight 9178.5463
Aromaticity 0.1125
Instability index 60.55625
Isoelectric point 9.72784423828
Runs 12
Runs residual 0.0111842105263
Runs probability 0.0264897250192
Amino acid sequence MNPIVNCICEGSRLRTPYDNLMSDDLRWKSFIPKPFPGPSPWKYCLPRNWFLVPKRLETA
AVEQATSRRAVTSFKAHSGP
Secondary structure LLLEEEEELLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLEEEELLLHHHH
HHHHHHLLLHHHEEELLLLL
PRMN -
PiMo -