ENST00000566747.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000566747.1

Source

Gencode19

Same with

lnc-TSKU-1:1,NONHSAT023192

Classification

intergenic

Length

4192 nt

Genomic location

chr11+:76511408..76515599

Exon number

1

Exons

76511408..76515599

Genome context

Sequence
000001 ACAAAATGGC AGCCTCTAAG TGCTCTTTCC CGCCCTCATC CAACCATGGA GTTATGAAGT AGATTACAGA GCCATGTAGT 000080
000081 CTGAGTCTGT TTTTTATAAC TCGCACTCAG AACTGAAGAA TTTTGTAAAG TTCTGGGACT GTAGAATCAC AGAACGACAC 000160
000161 CCGGTAATCC ACAGGGTCAT GGAGTAGGTA CTCACCGTCA GCTGTGGCCC AGCTCACCAC CATGGGTCAG CAGGGTCACC 000240
000241 AGCCTCTTTA TGCCTTTCAC AGTAATGCAG CGGCCAGCTA TGGCTATGTG TTCCTCATGC TTTGTGTACA TGCCATCATC 000320
000321 TCCTCACAAC TGCACCAGGT GTTTTTGTCA CCATACAGAT GAGGAAACCA GCATAGGCCA GGCTTTATCT GTCAGGTGGC 000400
000401 AATTCTCACA TTCTTCCTTG TCCTACCCCA GGGGCCGGGC CAGCTGTGTA AATCCCATGA ATCAGAGAGG GTAGAGGTGC 000480
000481 ACTGATAAAC CAAAAAGCAC TGGGATTCCA TTTATTTTTT ATTTTCAAAT AAGTTGCAGA AGTTATGCAG TTCTACATAG 000560
000561 CTCCGATCAG ACTGTGGATT CTAGATCTTA GAGTATAAAA AGCCAAAGGT CAAAGTCAAA GTCCTTTCTC TCCTGGCCCC 000640
000641 TTTTCACGGA TGGGGAATCT GAGGCCCAGA GACGAGTAAG TTCCCATGGT CCATGGCCAG GATTCTGTGC TTCAGAACGG 000720
000721 CCTATGTAAT TTGTGGGACC CAGTATAAAA TGAAAATGTG GGGCCCCTTG TTCAAAGTTA TTAGGATTTC AAGATGACAA 000800
000801 GAACAGAGCA TTAAACCAAG CACAGGGTCT TTCTATGGTT TCACTGCCCA TGAAGCCAGC CCTGCTGCCA TTTGATCATC 000880
000881 TCATTTCTAG AGGAGGGGCA AACACCCAGA CAGTGTTGGT CAGGATGGCA GAAGAGAGTA GGTGTGGATT TGTGTGTAAT 000960
000961 CCAATCCCTC TGTAGTTCAG GGAGCCAGTT AGACTCTTCC AAATGCAGGA ATGTCCCTCT GTCGTTATCA CACAACCCCC 001040
001041 TGGTTTCCCC ACCTTGCCAT GGCCAAAAGG CTTTCAGAGG GAAAAGGCAG CTAAAGAGGT GGATTCTACC ACCCAGCTGC 001120
001121 CACCAAACCA GCTCATGGGC TGTTTCTCTG GACTGCCAGG AATATGGGGG GGCAGAGGCC TGCCCCTTGC TCACTTTATG 001200
001201 TGCTTACAGA ATTTAAAGTC CACCAGCGCT AAAGCCCACT CATACCTAAT CTCCACCAAG GGCACTGTCT ATGACAACAG 001280
001281 AGGTCATCAT AGGCTAATAG GACCTTGCCC ATCAATGTTC AGTGTTCCTT GTTGGCTAAC GTTCACCAGG GTGCAAATGT 001360
001361 TGGTTGATAT ATAATGTTTA TCATATGAAT GACAGCTTCC ACCAATGACC AATATCCACA AAGGGAAAAT GTCTGTTGGA 001440
001441 GGCAGTGTCT GCTGTATATC AGTGCCCAGT GTTCACTGGT AGCTAATTGC AATTATACTT GCTCTGTGCA TCAATACCCA 001520
001521 ATGTCAGTCC ATAGCTCGGC TTCTAACGAC AGCAAATGTC TATCCAGTTA AGTCACATGC CCTGTGTTTA TTCTTCTCTT 001600
001601 TATTTATTTA AGTACTAGTG GTTCTGTCTA CAGGGATTAT TGTGTTTGTT GAGCTTGGAG GGAAATTCCC CCTGTGTTTA 001680
001681 TTCTTTAGTT CCCAAACCTA TTTATTATTT TCTTTTGCAT ATCCATTAGA TAGTCAAAGT GTTCTGAACT GGAGGTACAA 001760
001761 ACACATTCAT GTTTCTTTTT GTCTCCCTTC CCTCCCTCCC TCCCTCCCTC CCTTTCTTTC TTTCTTTCTA TCTCTCTCTC 001840
001841 TCTCTCTTTC TCTCTCTCTC TCTCTCTTTC TTTTTTCAGG GTCTTATTCT GTCACCCAGG CTGGAGTGCA GTGGCGTGAT 001920
001921 CATAGCTCAC TGTAGCCAAT CTCCCATGCA CAAGCAAGCC TCTTGCCTCA GCCTCCTGAG TAGCTGGGAC TACAGGCATA 002000
002001 CGTCACCATG CTCAGCTAAT TTTTTAATTT TTAGTAGAAA AGGTCTGGTC TTGAACTCCT GAGCTCAAGA AATCCTCCCA 002080
002081 CCTCAGCCTC CCAAAGCGTT GAGATTACAT GTGCAAGCCA CTGTGCCCTG CCATGTTTCT TAATATATGC ACATATGTAT 002160
002161 ATGTAACACA TAAATAATTA CATACATAAT ACAGGAAGAC ACAGAAATAA TTACATACAT GATACAGGAA GACACAGAAA 002240
002241 AAGAGAAACT GGTCTGATAC CAGAAGTATC AACTCAGGAA CAATTTTCTA CTAGCTGAGC CTCAGAAGCA GCAACTTTTC 002320
002321 CAAAGTGAAG TGATGAATGG AGGCGCCAGC CCTCCTCCTC AGGTTAAGAA AGGCAAAGAG CCCTGCTTTT GGCTGTAAAA 002400
002401 AGCCAGGTTC CCTAATCAGG TGAAGGCCTG AGGCAGGGAC TCCTTAGGGC AGTGTAACTA GTAGCCAAGG CACAGGCTCC 002480
002481 AAAGGGAGGT TGCCTGGGCT CAAGCCCGGC TCTGCCACTC ACAGCTGGGT GTCCCGGGGT GAGCCTCTCA GCCCCTCGTT 002560
002561 CAGCCTCAGT TCCACATGTG TAAATGGAGG TCTAGTAGCT ACCTCACAGG GCAGTTGTTG AAAATAAGCT AATGCTCCTA 002640
002641 AAACCCTGAG AACAGTGCTC TGTGTATGAT AAGTGTTCAT AGACGTCACA TTATTTATTT ATTTTGAAAA TTCTTCTTTT 002720
002721 AGTCAAACTT ATAAGTTTTC TGTGGCTCAA AATATTCTCA ACCAGGGTTT CTTTAGTGGC CATCAGCTCC CAGGGGGTGA 002800
002801 TATCATGGAA GCTGTTATGC TTAGGAATTT GTTTAAAAAG ACGTCCTGCC CTGTGCCCCA GTACATTTCA ACACCACCCA 002880
002881 GCCACACAGC CGCCTTCTGG CCCAACACTC TTAAAGACAC AGTGCTTGGG AAATGTCCTC ATGCCCCTTT CCTGAGGCAG 002960
002961 GTTTGCCACT GTTTCCCCAG GCCTGGCAGT CACAGATGGC AGTCACTGAC CTGCTGTGAT TTGAGAGATG GAGAGAAAAC 003040
003041 CTTCCACTCT TCTTATTCTC CCTAATAGCC TCAGTCTCTG CCTTCAGTTC CACATTTCCC TTTGGCGTAA GCTATGATTG 003120
003121 TCGTCCAAGG CCCCTCCTAG ATAGGCAAGG ACTCATGATA CCAAGAGTGT GATCAGGGGA TAGAGATGAG ATGTCTGGGT 003200
003201 TGGATGCGGG AGTGGGGTAT TTTCTAACTA ATGGGGTGCA AGGGGTACCT GAGCATGCTC TCAAAATGTG TTATACCCTA 003280
003281 AAAAATGTTT TTAAGGTAGT GTGTTGATAT AACAGTTGTT AAGACCATGA TGCTAGAGGC AAGATCGTGA GATCCATAGA 003360
003361 GAAGGTAGTT GAAGGGTAGG GCCTTTTATT CACATATATG CTGCCTTCTC CACCAACTGA TGTGATATCC TTTTATATTC 003440
003441 GTGACTCCAG TGAACCCACG CCTCTGAGGA TTTACACCCT TGTATTTGTA CTCCTCTTGA GTCTGGGCTG GCCTGTGACT 003520
003521 TTAATCAGTG CAATGCAGAA GTGGTTCAGT GCCAGTTCTA AGACTACAAA GAGAAAGAAA AGTTCAACCT TCCAATATCC 003600
003601 CAGCAGACAT CAGGCCCCAG CTGTGTCACC AGCTTCACGC CCACGAGTGA CCACAACAAA CCCAGCAGAA CCAACCAGCG 003680
003681 CATCCCAGCC CTGGTTGCAG AATCATGAGT AAATAAAATG GTTGCTGTTC TAAGCCATCG TGCTTTGGAG TGGTTTCTTA 003760
003761 TATGTCAGTA GATGACTGAA ACAACCAAAG CCACAGCCTC CGCCTCCCCC AGCCCCATTC CCCCACTCCT CCCCACTTGC 003840
003841 TAACCTCCAT GAAGCCCTGG GACTTGGGCA GCTGAAGGTG CAGAAAAGAT GCCAAATGAA AAAGCCACCC TCCTTGACAA 003920
003921 CAACCCAGCT GAGGGGAGCA GGCAGAGAGG GGCGGTTGAA GGAAGCACGC TGCCTGGTGT TTGAAAGCAT ATGAGGGGCT 004000
004001 GCCCTGAGCG CATCTCCTTA CATTCTTGTC TCAAGACCAC CCAGCAGGCA TGGCCCCTCC AGGTAACCTT GCACTCTCCT 004080
004081 CCCGGACCCC TCCCCAGTCC CCAGACAAAC CCACCTCTCC CTCCTGGACT CTCCATGGGT CCCTTCTCCC CACCTGCCAC 004160
004161 TGGGATCAGG AAGAATAAAG ACCTGAACTC AC
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Predicted Small Protein

Name ENST00000566747.1_smProtein_2804:3064
Length 87
Molecular weight 9790.2174
Aromaticity 0.104651162791
Instability index 64.4453488372
Isoelectric point 9.07586669922
Runs 13
Runs residual 0.0115411315515
Runs probability 0.0469609881375
Amino acid sequence MEAVMLRNLFKKTSCPVPQYISTPPSHTAAFWPNTLKDTVLGKCPHAPFLRQVCHCFPRP
GSHRWQSLTCCDLRDGEKTFHSSYSP
Secondary structure LLEEHHHHHHHHLLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHEEELLLL
LLLLLLLLEEEELLLLLEEEEELLLL
PRMN -
PiMo -