ENST00000566747.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000566747.1 |
Source |
Gencode19 |
Same with |
lnc-TSKU-1:1,NONHSAT023192 |
Classification |
intergenic |
Length |
4192 nt |
Genomic location |
chr11+:76511408..76515599 |
Exon number |
1 |
Exons |
76511408..76515599 |
Genome context |
|
Sequence |
000001 ACAAAATGGC AGCCTCTAAG TGCTCTTTCC CGCCCTCATC CAACCATGGA GTTATGAAGT AGATTACAGA GCCATGTAGT 000080
000081 CTGAGTCTGT TTTTTATAAC TCGCACTCAG AACTGAAGAA TTTTGTAAAG TTCTGGGACT GTAGAATCAC AGAACGACAC 000160 000161 CCGGTAATCC ACAGGGTCAT GGAGTAGGTA CTCACCGTCA GCTGTGGCCC AGCTCACCAC CATGGGTCAG CAGGGTCACC 000240 000241 AGCCTCTTTA TGCCTTTCAC AGTAATGCAG CGGCCAGCTA TGGCTATGTG TTCCTCATGC TTTGTGTACA TGCCATCATC 000320 000321 TCCTCACAAC TGCACCAGGT GTTTTTGTCA CCATACAGAT GAGGAAACCA GCATAGGCCA GGCTTTATCT GTCAGGTGGC 000400 000401 AATTCTCACA TTCTTCCTTG TCCTACCCCA GGGGCCGGGC CAGCTGTGTA AATCCCATGA ATCAGAGAGG GTAGAGGTGC 000480 000481 ACTGATAAAC CAAAAAGCAC TGGGATTCCA TTTATTTTTT ATTTTCAAAT AAGTTGCAGA AGTTATGCAG TTCTACATAG 000560 000561 CTCCGATCAG ACTGTGGATT CTAGATCTTA GAGTATAAAA AGCCAAAGGT CAAAGTCAAA GTCCTTTCTC TCCTGGCCCC 000640 000641 TTTTCACGGA TGGGGAATCT GAGGCCCAGA GACGAGTAAG TTCCCATGGT CCATGGCCAG GATTCTGTGC TTCAGAACGG 000720 000721 CCTATGTAAT TTGTGGGACC CAGTATAAAA TGAAAATGTG GGGCCCCTTG TTCAAAGTTA TTAGGATTTC AAGATGACAA 000800 000801 GAACAGAGCA TTAAACCAAG CACAGGGTCT TTCTATGGTT TCACTGCCCA TGAAGCCAGC CCTGCTGCCA TTTGATCATC 000880 000881 TCATTTCTAG AGGAGGGGCA AACACCCAGA CAGTGTTGGT CAGGATGGCA GAAGAGAGTA GGTGTGGATT TGTGTGTAAT 000960 000961 CCAATCCCTC TGTAGTTCAG GGAGCCAGTT AGACTCTTCC AAATGCAGGA ATGTCCCTCT GTCGTTATCA CACAACCCCC 001040 001041 TGGTTTCCCC ACCTTGCCAT GGCCAAAAGG CTTTCAGAGG GAAAAGGCAG CTAAAGAGGT GGATTCTACC ACCCAGCTGC 001120 001121 CACCAAACCA GCTCATGGGC TGTTTCTCTG GACTGCCAGG AATATGGGGG GGCAGAGGCC TGCCCCTTGC TCACTTTATG 001200 001201 TGCTTACAGA ATTTAAAGTC CACCAGCGCT AAAGCCCACT CATACCTAAT CTCCACCAAG GGCACTGTCT ATGACAACAG 001280 001281 AGGTCATCAT AGGCTAATAG GACCTTGCCC ATCAATGTTC AGTGTTCCTT GTTGGCTAAC GTTCACCAGG GTGCAAATGT 001360 001361 TGGTTGATAT ATAATGTTTA TCATATGAAT GACAGCTTCC ACCAATGACC AATATCCACA AAGGGAAAAT GTCTGTTGGA 001440 001441 GGCAGTGTCT GCTGTATATC AGTGCCCAGT GTTCACTGGT AGCTAATTGC AATTATACTT GCTCTGTGCA TCAATACCCA 001520 001521 ATGTCAGTCC ATAGCTCGGC TTCTAACGAC AGCAAATGTC TATCCAGTTA AGTCACATGC CCTGTGTTTA TTCTTCTCTT 001600 001601 TATTTATTTA AGTACTAGTG GTTCTGTCTA CAGGGATTAT TGTGTTTGTT GAGCTTGGAG GGAAATTCCC CCTGTGTTTA 001680 001681 TTCTTTAGTT CCCAAACCTA TTTATTATTT TCTTTTGCAT ATCCATTAGA TAGTCAAAGT GTTCTGAACT GGAGGTACAA 001760 001761 ACACATTCAT GTTTCTTTTT GTCTCCCTTC CCTCCCTCCC TCCCTCCCTC CCTTTCTTTC TTTCTTTCTA TCTCTCTCTC 001840 001841 TCTCTCTTTC TCTCTCTCTC TCTCTCTTTC TTTTTTCAGG GTCTTATTCT GTCACCCAGG CTGGAGTGCA GTGGCGTGAT 001920 001921 CATAGCTCAC TGTAGCCAAT CTCCCATGCA CAAGCAAGCC TCTTGCCTCA GCCTCCTGAG TAGCTGGGAC TACAGGCATA 002000 002001 CGTCACCATG CTCAGCTAAT TTTTTAATTT TTAGTAGAAA AGGTCTGGTC TTGAACTCCT GAGCTCAAGA AATCCTCCCA 002080 002081 CCTCAGCCTC CCAAAGCGTT GAGATTACAT GTGCAAGCCA CTGTGCCCTG CCATGTTTCT TAATATATGC ACATATGTAT 002160 002161 ATGTAACACA TAAATAATTA CATACATAAT ACAGGAAGAC ACAGAAATAA TTACATACAT GATACAGGAA GACACAGAAA 002240 002241 AAGAGAAACT GGTCTGATAC CAGAAGTATC AACTCAGGAA CAATTTTCTA CTAGCTGAGC CTCAGAAGCA GCAACTTTTC 002320 002321 CAAAGTGAAG TGATGAATGG AGGCGCCAGC CCTCCTCCTC AGGTTAAGAA AGGCAAAGAG CCCTGCTTTT GGCTGTAAAA 002400 002401 AGCCAGGTTC CCTAATCAGG TGAAGGCCTG AGGCAGGGAC TCCTTAGGGC AGTGTAACTA GTAGCCAAGG CACAGGCTCC 002480 002481 AAAGGGAGGT TGCCTGGGCT CAAGCCCGGC TCTGCCACTC ACAGCTGGGT GTCCCGGGGT GAGCCTCTCA GCCCCTCGTT 002560 002561 CAGCCTCAGT TCCACATGTG TAAATGGAGG TCTAGTAGCT ACCTCACAGG GCAGTTGTTG AAAATAAGCT AATGCTCCTA 002640 002641 AAACCCTGAG AACAGTGCTC TGTGTATGAT AAGTGTTCAT AGACGTCACA TTATTTATTT ATTTTGAAAA TTCTTCTTTT 002720 002721 AGTCAAACTT ATAAGTTTTC TGTGGCTCAA AATATTCTCA ACCAGGGTTT CTTTAGTGGC CATCAGCTCC CAGGGGGTGA 002800 002801 TATCATGGAA GCTGTTATGC TTAGGAATTT GTTTAAAAAG ACGTCCTGCC CTGTGCCCCA GTACATTTCA ACACCACCCA 002880 002881 GCCACACAGC CGCCTTCTGG CCCAACACTC TTAAAGACAC AGTGCTTGGG AAATGTCCTC ATGCCCCTTT CCTGAGGCAG 002960 002961 GTTTGCCACT GTTTCCCCAG GCCTGGCAGT CACAGATGGC AGTCACTGAC CTGCTGTGAT TTGAGAGATG GAGAGAAAAC 003040 003041 CTTCCACTCT TCTTATTCTC CCTAATAGCC TCAGTCTCTG CCTTCAGTTC CACATTTCCC TTTGGCGTAA GCTATGATTG 003120 003121 TCGTCCAAGG CCCCTCCTAG ATAGGCAAGG ACTCATGATA CCAAGAGTGT GATCAGGGGA TAGAGATGAG ATGTCTGGGT 003200 003201 TGGATGCGGG AGTGGGGTAT TTTCTAACTA ATGGGGTGCA AGGGGTACCT GAGCATGCTC TCAAAATGTG TTATACCCTA 003280 003281 AAAAATGTTT TTAAGGTAGT GTGTTGATAT AACAGTTGTT AAGACCATGA TGCTAGAGGC AAGATCGTGA GATCCATAGA 003360 003361 GAAGGTAGTT GAAGGGTAGG GCCTTTTATT CACATATATG CTGCCTTCTC CACCAACTGA TGTGATATCC TTTTATATTC 003440 003441 GTGACTCCAG TGAACCCACG CCTCTGAGGA TTTACACCCT TGTATTTGTA CTCCTCTTGA GTCTGGGCTG GCCTGTGACT 003520 003521 TTAATCAGTG CAATGCAGAA GTGGTTCAGT GCCAGTTCTA AGACTACAAA GAGAAAGAAA AGTTCAACCT TCCAATATCC 003600 003601 CAGCAGACAT CAGGCCCCAG CTGTGTCACC AGCTTCACGC CCACGAGTGA CCACAACAAA CCCAGCAGAA CCAACCAGCG 003680 003681 CATCCCAGCC CTGGTTGCAG AATCATGAGT AAATAAAATG GTTGCTGTTC TAAGCCATCG TGCTTTGGAG TGGTTTCTTA 003760 003761 TATGTCAGTA GATGACTGAA ACAACCAAAG CCACAGCCTC CGCCTCCCCC AGCCCCATTC CCCCACTCCT CCCCACTTGC 003840 003841 TAACCTCCAT GAAGCCCTGG GACTTGGGCA GCTGAAGGTG CAGAAAAGAT GCCAAATGAA AAAGCCACCC TCCTTGACAA 003920 003921 CAACCCAGCT GAGGGGAGCA GGCAGAGAGG GGCGGTTGAA GGAAGCACGC TGCCTGGTGT TTGAAAGCAT ATGAGGGGCT 004000 004001 GCCCTGAGCG CATCTCCTTA CATTCTTGTC TCAAGACCAC CCAGCAGGCA TGGCCCCTCC AGGTAACCTT GCACTCTCCT 004080 004081 CCCGGACCCC TCCCCAGTCC CCAGACAAAC CCACCTCTCC CTCCTGGACT CTCCATGGGT CCCTTCTCCC CACCTGCCAC 004160 004161 TGGGATCAGG AAGAATAAAG ACCTGAACTC AC |
Predicted Small Protein
Name | ENST00000566747.1_smProtein_2804:3064 |
Length | 87 |
Molecular weight | 9790.2174 |
Aromaticity | 0.104651162791 |
Instability index | 64.4453488372 |
Isoelectric point | 9.07586669922 |
Runs | 13 |
Runs residual | 0.0115411315515 |
Runs probability | 0.0469609881375 |
Amino acid sequence | MEAVMLRNLFKKTSCPVPQYISTPPSHTAAFWPNTLKDTVLGKCPHAPFLRQVCHCFPRP GSHRWQSLTCCDLRDGEKTFHSSYSP |
Secondary structure | LLEEHHHHHHHHLLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHEEELLLL LLLLLLLLEEEELLLLLEEEEELLLL |
PRMN | - |
PiMo | - |