ENST00000566532.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000566532.1

Source

Gencode19

Same with

lnc-SMCR7-1:1

Classification

intergenic

Length

749 nt

Genomic location

chr17+:18171394..18172142

Exon number

1

Exons

18171394..18172142

Genome context

Sequence
000001 CAGCCACATC CAAGCCCCAG CACAGCAAGG TGCTCCCAGA TGCCACTCCA GCCCCTGGTC AGAGCGCAGC TGTCCAGGAA 000080
000081 GCAAGCTCAG TCTAGAGTGC CACTCCTTCG ACGACCAGAC CCCAACACAA GCCTGATGTA GAAGCCACTT GCTTCAGGTA 000160
000161 GCTCTAAATG TACTGTCTCA TACCATGGCT TAAAAAAAAA AAATCCAGGA TGAGTTAAAA GTGTTCGTGG TTTCATCACC 000240
000241 TAGCCAAGGT TAATGTCTGG GTCTTCCGTT TCTAGCCAGA GAACTGGAAA CAAATCACTG TTTTGCTAGG AGCTTTGCAT 000320
000321 GACCTCACGC CCTAGGCTGC CGGGTCCTGG GCTGTCCTGA TGGGCTGTGA AATCCCACCC ACTCCCAGGG CTGCCGGGTC 000400
000401 CTGGGCTGTC CTGATGGGCT GTGAAATCCC ACCCACTCCC CTCCCCGCGA GGCAAGGACA GCCTCTGCCC TGCCTGCCTG 000480
000481 GGAGCACGGT ATGGGCTTGC CTAGGCCTCA GTGTCTTAAC ACTGTGGTGA CTCAAATTCC TTGTTTTACC TTCACCAAGT 000560
000561 AACCCAGAGC CAGGATCCTT GATGACTCTG GTAAGGCAGT GACTACCCCT GCTCAGAATG CAAGGGTCGC TAGGGAAGAT 000640
000641 TTTAGAAAAA AAAAAAGGAC TCCAAAAATG GAGAATCTAA ATGTAGTCCT TTGAAAATGT CACCCATAGA TCCTCTACCA 000720
000721 CTAACTGTAA TAAATTTGAC CAAATAGCA
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Predicted Small Protein

Name ENST00000566532.1_smProtein_359:529
Length 57
Molecular weight 5841.9322
Aromaticity 0.0535714285714
Instability index 54.0785714286
Isoelectric point 5.88836669922
Runs 7
Runs residual 0.0282982045277
Runs probability 0.0277840866077
Amino acid sequence MGCEIPPTPRAAGSWAVLMGCEIPPTPLPARQGQPLPCLPGSTVWACLGLSVLTLW
Secondary structure LLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLEEEEL
PRMN -
PiMo -