ENST00000566532.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000566532.1 |
Source |
Gencode19 |
Same with |
lnc-SMCR7-1:1 |
Classification |
intergenic |
Length |
749 nt |
Genomic location |
chr17+:18171394..18172142 |
Exon number |
1 |
Exons |
18171394..18172142 |
Genome context |
|
Sequence |
000001 CAGCCACATC CAAGCCCCAG CACAGCAAGG TGCTCCCAGA TGCCACTCCA GCCCCTGGTC AGAGCGCAGC TGTCCAGGAA 000080
000081 GCAAGCTCAG TCTAGAGTGC CACTCCTTCG ACGACCAGAC CCCAACACAA GCCTGATGTA GAAGCCACTT GCTTCAGGTA 000160 000161 GCTCTAAATG TACTGTCTCA TACCATGGCT TAAAAAAAAA AAATCCAGGA TGAGTTAAAA GTGTTCGTGG TTTCATCACC 000240 000241 TAGCCAAGGT TAATGTCTGG GTCTTCCGTT TCTAGCCAGA GAACTGGAAA CAAATCACTG TTTTGCTAGG AGCTTTGCAT 000320 000321 GACCTCACGC CCTAGGCTGC CGGGTCCTGG GCTGTCCTGA TGGGCTGTGA AATCCCACCC ACTCCCAGGG CTGCCGGGTC 000400 000401 CTGGGCTGTC CTGATGGGCT GTGAAATCCC ACCCACTCCC CTCCCCGCGA GGCAAGGACA GCCTCTGCCC TGCCTGCCTG 000480 000481 GGAGCACGGT ATGGGCTTGC CTAGGCCTCA GTGTCTTAAC ACTGTGGTGA CTCAAATTCC TTGTTTTACC TTCACCAAGT 000560 000561 AACCCAGAGC CAGGATCCTT GATGACTCTG GTAAGGCAGT GACTACCCCT GCTCAGAATG CAAGGGTCGC TAGGGAAGAT 000640 000641 TTTAGAAAAA AAAAAAGGAC TCCAAAAATG GAGAATCTAA ATGTAGTCCT TTGAAAATGT CACCCATAGA TCCTCTACCA 000720 000721 CTAACTGTAA TAAATTTGAC CAAATAGCA |
Predicted Small Protein
Name | ENST00000566532.1_smProtein_359:529 |
Length | 57 |
Molecular weight | 5841.9322 |
Aromaticity | 0.0535714285714 |
Instability index | 54.0785714286 |
Isoelectric point | 5.88836669922 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0277840866077 |
Amino acid sequence | MGCEIPPTPRAAGSWAVLMGCEIPPTPLPARQGQPLPCLPGSTVWACLGLSVLTLW |
Secondary structure | LLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLEEEEL |
PRMN | - |
PiMo | - |