ENST00000566531.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000566531.1 |
Source |
Gencode19 |
Same with |
lnc-RABGAP1-1:5,NONHSAT134604 |
Classification |
intergenic |
Length |
914 nt |
Genomic location |
chr9+:125701699..125702612 |
Exon number |
1 |
Exons |
125701699..125702612 |
Genome context |
|
Sequence |
000001 CCTCAGCCTC CCAAAGTGTT AAAATTACAG GCATGAGCCA CCACACCTGG CCTTTTTTAT TAAAAAAAAT TTTTTTTAAA 000080
000081 TGCAATGTTT TCTTTTTTTG TTGTTGTTTT AGCTTGTGTC TATTCTCCAA AGCATGTTGT ACTGATTGTG TAGTACAATT 000160 000161 TTATTTAAAA ATGTATGTTA AGATTTACAT AAATATTTGG GGTGTCCATG AATCAAGAAA TACATGAAAG TATGGGCACC 000240 000241 AAAACGTTAA AAGTGGTTTT GTTGGGAGTT CAGGGGATTT TACTTTCTCC CTAATACTTT ATTCTTTGAA TATCTTGAAA 000320 000321 TGGATATTTT GTAACTGTAT AAGGAGAAAG GAAGCGAAAC TATTTTTCTG CAGGGGTACA CCCACATCTA TTGTATTAGA 000400 000401 CAAATCACAG AGGGATTGCA ACAGAACACA GATTTTTCTC ACTGTTTTTT CTCTGGTTGA TCGGGATGCA TTATCCACCA 000480 000481 GAAAACACTG TAGACGACTC ACTCACCAGG AAAAGAGCAT ATGCCAGTTG GAATAAATAA AGGGGAAGAG TAAGGAAGAG 000560 000561 GCTGTAGAAT TATTTTATAA ATTATCAAGT CTTATGAGCC AGGTGCAGTG GTGCATGCCT ATGTACAGTC CCAGCTACTC 000640 000641 AGGAGGCTGA GGTGGTAGGA TAGCTTGAGC CCAGGAGTTC GAGGGTGGAG TGTGATATGA TCGTCTGTGA ATAGCCACAG 000720 000721 CACTGCATCC TGGACAAGAT AGGGTCTCTT TAAAAATAAG ACTTAACTAG CACTTTAATA ATCATTGTTT TTGTTCCCAA 000800 000801 CTGCATTGTA CATTCATTGA GGACAGGGAC TTTAAACTTC ATTATATTGC TGTTGCTGTG TTTCACCTTT GAATGATTTT 000880 000881 TAAATAAAAA TCTCATCTTT GAGTCACAAT CTGA |
Predicted Small Protein
Name | ENST00000566531.1_smProtein_32:226 |
Length | 65 |
Molecular weight | 7734.2686 |
Aromaticity | 0.21875 |
Instability index | 46.45328125 |
Isoelectric point | 8.86822509766 |
Runs | 12 |
Runs residual | 0.03890625 |
Runs probability | 0.0393996938115 |
Amino acid sequence | MSHHTWPFLLKKIFFKCNVFFFCCCFSLCLFSKACCTDCVVQFYLKMYVKIYINIWGVHE SRNT |
Secondary structure | LLLLLHHHHHHHHHHLLLEEEEEEEEELLEELLLHHHLHHHHHHHHHHHHEEEELLLLLL LLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHH LLLL |
PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTT iiii |