ENST00000565783.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000565783.1 |
Source |
Gencode19 |
Same with |
lnc-NSMCE1-3:1,NONHSAT141428 |
Classification |
antisense |
Length |
499 nt |
Genomic location |
chr16-:27078249..27079179 |
Exon number |
2 |
Exons |
27078249..27078310,27078743..27079179 |
Genome context |
|
Sequence |
000001 AAAACACCTT TCCTACTTGT TTTGGGAATA TCCACTCTGG GTGCAGCCTG TGTTTGCTGG GCCTGTGTGT TGTTTTCTGG 000080
000081 GAGACTCTGG CTGCTGGAGA GGATTCTCAC AAAGGCATGC ACACCTGGGC AGGCTGCTCC CCCGTGGTGA CCTGCTCACT 000160 000161 GGTTTTCACG TTGCCGCCCG TCTTGTCCTC CTGCACGCTG GTGTGGCTGC TCTGCCTGTT TTGGGCACTG CCATCCAGCC 000240 000241 GGACGCTCTG ACGGCTGCTG GCCTGGGTGG AGGGAAGGCT GGCTGTGGAA GTCAGCAGCC CGCTGCTCAC CTTGTAGGTG 000320 000321 AGGGCACTGC TGCCCAAGCT GATGAAGCTG GCGCTGGACA GGATGCTGCT GCCGCTGCCG CTGCCGGGCA GGCTGGCCTC 000400 000401 ACTCTTTCCC TCCAGTCTGC TTGGTGCTGT GGGCGGGGGG GCCCTGGGAG GCCTCTGAAT GTTGGCTGTG ACCTCTCTGG 000480 000481 GGAGAGGTGA CTCCGTATA |
Predicted Small Protein
Name | ENST00000565783.1_smProtein_116:250 |
Length | 45 |
Molecular weight | 4837.8098 |
Aromaticity | 0.113636363636 |
Instability index | 80.2818181818 |
Isoelectric point | 7.69244384766 |
Runs | 5 |
Runs residual | 0.0494652406417 |
Runs probability | 0.127963257375 |
Amino acid sequence | MHTWAGCSPVVTCSLVFTLPPVLSSCTLVWLLCLFWALPSSRTL |
Secondary structure | LLLLLLLLLEEEEEEEEELLLLLLHHHHHHHHHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTiiiiiii |