ENST00000564875.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000564875.1 |
Source |
Gencode19 |
Same with |
lnc-C16orf78-5:1,NONHSAT142368 |
Classification |
intergenic |
Length |
654 nt |
Genomic location |
chr16+:49321341..49324138 |
Exon number |
3 |
Exons |
49321341..49321386,49323449..49323566,49323649..49324138 |
Genome context |
|
Sequence |
000001 CCAGAAGGAA AATGAAAGAA GAAATTTAAA TACCACTTGA AGAGAGGTGC TGCCCAGTTC ATGAGTGCTG CTGCTGTCCT 000080
000081 GCCCAAGTAC CCAGCTTGCA GAGTGCCAGA GTTAGAGTCC CAGGGGTGTT CTCCACAGCT GCATGCTTGA TCCAGGCCTA 000160 000161 TCAGATATAT TCCATTGAAA GTCCTCATTC TCAAATTTAA AACAAAGACT TTTTGTGTAC CTCAATAGCA ATGCACACAC 000240 000241 AGTTGGCTTC ACAAACATAT TGTACATTTC TTTTTTTCAT ATTTATTCAA CAAATGTATA TTGACTACCC ACCGTGTGAC 000320 000321 AGGTGTTATT TGTTGACGGA ACCAGGCATC ATCAGCAAAC AAAACTGACA AAGCTTCCTG CCCTCTGTGG AAGGCATCTG 000400 000401 AGGAAGAGAC TGGATTTTGT AGCAACATGT TATTCTCATT ATAAACTTTA TCATTGGAAT ACTAAAGCCA AATCATCCCC 000480 000481 CATCTCCTTG ATCAGGATAC CCACTTAATC TAGGCAGCTA CACAATTGTG AGAGCCTTTG TTTTTTTCTG CTGAAACATC 000560 000561 CTTAAAAAGA TACCTCACAA CCCAAGATTT GGCTTTTCTT AAATACGATT TTTAATTTTT TTCATTTCTA TCTAGAGATT 000640 000641 TAATTGGAAA TGGA |
Predicted Small Protein
Name | ENST00000564875.1_smProtein_230:367 |
Length | 46 |
Molecular weight | 5383.2221 |
Aromaticity | 0.177777777778 |
Instability index | 62.8422222222 |
Isoelectric point | 5.36175537109 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0259419082949 |
Amino acid sequence | MHTQLASQTYCTFLFFIFIQQMYIDYPPCDRCYLLTEPGIISKQN |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLEEELLLLLEEELLL |
PRMN | - |
PiMo | - |