ENST00000563846.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000563846.1 |
Source |
Gencode19 |
Same with |
lnc-GANC-1:1,NONHSAT042001 |
Classification |
antisense |
Length |
823 nt |
Genomic location |
chr15+:42500611..42519188 |
Exon number |
5 |
Exons |
42500611..42500882,42500962..42501115,42511117..42511151,42516606..42516756,42518978..42519188 |
Genome context |
|
Sequence |
000001 GACCCATAGC TACTCCATCC CGAGTAGCCA TGGGCTTACC ATAGAAGGAA CAAACTCTTA ATCTTAGAAC TGCTTTAGGC 000080
000081 AGTGGGCGTG ATGGTTAAAA ACTCGGCCTT TGGCGTCGAC CTCAGACGGA GATCTACCAA TTAGGAAATT AGCTGTGATT 000160 000161 TAGAAAATTT AATATTTCGA TGCCATACTT TCCTAATCTG CAAAATTTTT GTAAATACCT GTGACCTAGT GTCGTGAGCG 000240 000241 CTTAGCAACA CCTGACACCC ACTAAGCTCT CAGCCAGTGG TTCTGAAAGT GGTTCTAGAC CAGCAACAAC AGCAGTAGCA 000320 000321 GCAGCACCTG TGAACTTGTT AGAAATGCAA AGTTTCAGGC CCATTCCAGT TCTACTGAAT CTGAAACTCG AAGGGAACAG 000400 000401 CAACCTATGT TTTAATAAAC CCCAAGGTAT ATACCCAGTG ACATGAATCC TGGATCATAA GACAGAAACA ATGTGTTACT 000480 000481 ACATTTTTGT TGCTGGGGAA AAGAACTGAC TTGATGTACT TCCTCAGAAG AGAGACCGAA CACCAGGAAA GAAAATACAG 000560 000561 ATTTCCCCAG ACTCTACCTG CTATCACCAT TTTGTTGTAA TACACCTTAA CTCAGAGTAA ACAGAAGAGT CCAAGAACCT 000640 000641 CTGGTTGTTT GCAGATGGTC GCCAGAGAAC CATGATGACA AAGAGGATCA TGGAGAACAG CAAGCGCCAG ATGGCATCGT 000720 000721 CTACCCACAG CTCCCGCCAG TCCTACAATA CAGGGGAGAA GTACAACATT TATACACATT ATCTTAACCC CTTGTTCATA 000800 000801 AAGCCTTTGG CATAGAACAA AAA |
Predicted Small Protein
Name | ENST00000563846.1_smProtein_671:814 |
Length | 48 |
Molecular weight | 5568.3501 |
Aromaticity | 0.106382978723 |
Instability index | 62.5489361702 |
Isoelectric point | 9.99395751953 |
Runs | 7 |
Runs residual | 0.0173404255319 |
Runs probability | 0.0285916168269 |
Amino acid sequence | MMTKRIMENSKRQMASSTHSSRQSYNTGEKYNIYTHYLNPLFIKPLA |
Secondary structure | LLHHHHHHHHHHHHHHLLLLLLLLLLLLLEEEEEEEELLLLEELLLL |
PRMN | - |
PiMo | - |