ENST00000563553.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000563553.1 |
Source |
Gencode19 |
Same with |
lnc-AC006305.1-1:1 |
Classification |
intergenic |
Length |
2310 nt |
Genomic location |
chr18-:53548919..53587430 |
Exon number |
4 |
Exons |
53548919..53550900,53565236..53565434,53565568..53565658,53587393..53587430 |
Genome context |
|
Sequence |
000001 AGTGTACAGA GCTGCTGTCT TTTGTAGATG GGAAAAAGGG TATTTGTTAT GTCTCAGGAA AGCTGGATGA CTATCTCATT 000080
000081 CTCTGATGAT GGAGAAGAAT ACTCACAACC TGCTCCCCAC CTCCCACTGT GAAATGCCAA TATGGTGGAA ACAGAAGGGA 000160 000161 GAAGAAAGAA CAGCGGAGAC ACTGATCATT CGAAACCAAA GAAGCAGCTC ATGCATAATG GAGAGCTATC TGCATGCAAA 000240 000241 TTGCTAGGAG TACTTCCTAC TTTTCTGGGA TATTGTATTT AGCCCTCTGT ACTCTATTCA GAAGAGTTCT GTTCCCCAGG 000320 000321 CCAAGAAGGG GAAATACATT GAAGACAACA TTAAGTGTTG GAACTAAATG CACAAGAATC AGGAGCATCT TAACGCCATG 000400 000401 GCCTGAACAT GATAGGTACT GAAGAACTAT GGATTAATTA TTTTTGATTG ATTGATTGAT TGAAAATGTG TCACTATAAA 000480 000481 AAAGCAAATG TGAAGCTTAC AGAGGGATAG TGGTGCAGTT AAATGCTAAA GTTAAATCTC CTTTTCTGGC AGCTGCAGAA 000560 000561 AGATTCCTAT TCTGCCTCCT ATACTTGCTC TGAGGATATT TAAATTGTAG AGCTCTAAGT GGCTGCCCTC AATTTGCTTC 000640 000641 AAAGATAATA ACGTCACCTT ACAGTTTATA AAGCACCTTG TTACATCCCT TTGGAGACCT ACAGCAATCC CGTATGAATC 000720 000721 TGGGGATTAT TTATTCTTTT TTTCAAATAA GAAAACTGAA GCACAGAGGA AGGAGTTACA CATTAAAAGC CAGGGAACTT 000800 000801 GTACATTAGT TAAGGTAATG CTAGCAGCTA TAACAAATAA ATGCCCAAAT CTCAGAACTT AATACAATAA ATCTTACTTT 000880 000881 TTGATTATCC TATGGCACCA TACGGTGTTC TGGGTAGATG AAGAGTCTTC CACAAGGTAT TTCAGGGATC TGTGGCTCTA 000960 000961 CCTTCCTCTA GTCTTCAAAT CTTCTGCATC CAACAAGCAG ATGGAGAATG AGGAATTGGA ATAGGCATTC CTTAGTTTAA 001040 001041 GCTCTTTGGT CCAGAACTGA AACACATAAC ATCTGCTGAT ATCCTATGAC TAGAACATCA CCTGGCCCTC ATCTGGATAC 001120 001121 AAGACGATGG TACTGAGAAA TAATTGCAGC CTGGGCAGAT GCTTTTCAGT GCAATTCTAT TCTAAAGAAA AGGCAGACTG 001200 001201 AATGCTACAT GCCAGTAAGT AGAATCTCCA GGACTCAAAA ACAGACACAT GACATTAAAT GCAGTGCTCT TGCTACTACA 001280 001281 ACACACTGCC TCTGTATTCA GAGTTGCCTC AGCCTAGATC ATAGTTTTGG AGTGAGTTAG AACCTGATCC TAACACTTGA 001360 001361 CAGTATTAAA AGGGGGACTG TCACCAGTGG GACGAACCCT TGAACTAAGC ATGAGGAGAA CCTGGCTTAT GCCCTGGCTC 001440 001441 TGCCCTATCT GACTGATTGA GTAAATCATG AAATCACTCT GCATTTCTTT TTTTCAAAGT CATTGATACA AACCTATACT 001520 001521 TCTCAACTTT TCCCAATTAA GCTACTAGAA TCTTACATTA TTTTTCCCTA AGATGCTCAG ACATTCCTAT AATGTTATAC 001600 001601 GAGTCCGTGT TATAAGAGCC CCTCAACAAT AAGCGGTAGC TGATGAAACC ATATCAATAC ATAATTCTAT ACAAAGGTAA 001680 001681 GAAACTGGAA ACATTATTTG GCCTTCATAG ACCTTGCTTG GATAACTGCT CAATTTCTAT GAAGGTATCG GAATTATTGG 001760 001761 GAGGTGAAAT TGGCCACTCC CGTAACTATT TCTGCCGATC TCCAATTGGG AACCATAGAG CTTCATGACC TAAGGCTCCT 001840 001841 ACCAGTTACC ATCTGAAAAT GTCTTTTGTC TCTGTAATCT TGACAAGTGA ATTCCAGTCA CACCCATCCT AAGAAGAGTG 001920 001921 TGCCTGGAAA TACTGGTTTT CTTCTTCTCA AGCTGTCTGA ATCCAGAAGT ATATATTAAT CTGGAAGTGG CTGGAGGTGA 002000 002001 TGGAAAAGAG AGGATGTTGA AAAAAGCACC CTTGGTGAAG TGGAGCAGCA ACTCGCTCAG AAGCCTCATG AGTCTGTAAC 002080 002081 ATCGTTTGAA CTCCAAAGCT TTCTTCATCA CTCATAAATC CATAATCATC ACTCCACCTC GGAAAAATCT CACTCTGCTC 002160 002161 TTCTCTATCT TCTACATGAA ATGTATCAGG AAGAAAAATT AACATAAGGA ACTTTCACCA GCTTTATAAA ATCTTAACCC 002240 002241 TTTTGTACAC TTGTTTCTGA TAATTTTAAG AACTAATATC AATAATCATT AAAACGTTGA ACCGTGCCCA |
Predicted Small Protein
Name | ENST00000563553.1_smProtein_233:421 |
Length | 63 |
Molecular weight | 7260.4778 |
Aromaticity | 0.112903225806 |
Instability index | 50.8887096774 |
Isoelectric point | 11.2247924805 |
Runs | 9 |
Runs residual | 0.00847926267281 |
Runs probability | 0.0433276413668 |
Amino acid sequence | MQIARSTSYFSGILYLALCTLFRRVLFPRPRRGNTLKTTLSVGTKCTRIRSILTPWPEHD RY |
Secondary structure | LLEEELLLLHHHHHHHHHHHHHHHHLLLLLLLLLLEEEEEEELLEEEEEEEELLLLLLLL LL |
PRMN | - |
PiMo | - |