ENST00000563553.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000563553.1

Source

Gencode19

Same with

lnc-AC006305.1-1:1

Classification

intergenic

Length

2310 nt

Genomic location

chr18-:53548919..53587430

Exon number

4

Exons

53548919..53550900,53565236..53565434,53565568..53565658,53587393..53587430

Genome context

Sequence
000001 AGTGTACAGA GCTGCTGTCT TTTGTAGATG GGAAAAAGGG TATTTGTTAT GTCTCAGGAA AGCTGGATGA CTATCTCATT 000080
000081 CTCTGATGAT GGAGAAGAAT ACTCACAACC TGCTCCCCAC CTCCCACTGT GAAATGCCAA TATGGTGGAA ACAGAAGGGA 000160
000161 GAAGAAAGAA CAGCGGAGAC ACTGATCATT CGAAACCAAA GAAGCAGCTC ATGCATAATG GAGAGCTATC TGCATGCAAA 000240
000241 TTGCTAGGAG TACTTCCTAC TTTTCTGGGA TATTGTATTT AGCCCTCTGT ACTCTATTCA GAAGAGTTCT GTTCCCCAGG 000320
000321 CCAAGAAGGG GAAATACATT GAAGACAACA TTAAGTGTTG GAACTAAATG CACAAGAATC AGGAGCATCT TAACGCCATG 000400
000401 GCCTGAACAT GATAGGTACT GAAGAACTAT GGATTAATTA TTTTTGATTG ATTGATTGAT TGAAAATGTG TCACTATAAA 000480
000481 AAAGCAAATG TGAAGCTTAC AGAGGGATAG TGGTGCAGTT AAATGCTAAA GTTAAATCTC CTTTTCTGGC AGCTGCAGAA 000560
000561 AGATTCCTAT TCTGCCTCCT ATACTTGCTC TGAGGATATT TAAATTGTAG AGCTCTAAGT GGCTGCCCTC AATTTGCTTC 000640
000641 AAAGATAATA ACGTCACCTT ACAGTTTATA AAGCACCTTG TTACATCCCT TTGGAGACCT ACAGCAATCC CGTATGAATC 000720
000721 TGGGGATTAT TTATTCTTTT TTTCAAATAA GAAAACTGAA GCACAGAGGA AGGAGTTACA CATTAAAAGC CAGGGAACTT 000800
000801 GTACATTAGT TAAGGTAATG CTAGCAGCTA TAACAAATAA ATGCCCAAAT CTCAGAACTT AATACAATAA ATCTTACTTT 000880
000881 TTGATTATCC TATGGCACCA TACGGTGTTC TGGGTAGATG AAGAGTCTTC CACAAGGTAT TTCAGGGATC TGTGGCTCTA 000960
000961 CCTTCCTCTA GTCTTCAAAT CTTCTGCATC CAACAAGCAG ATGGAGAATG AGGAATTGGA ATAGGCATTC CTTAGTTTAA 001040
001041 GCTCTTTGGT CCAGAACTGA AACACATAAC ATCTGCTGAT ATCCTATGAC TAGAACATCA CCTGGCCCTC ATCTGGATAC 001120
001121 AAGACGATGG TACTGAGAAA TAATTGCAGC CTGGGCAGAT GCTTTTCAGT GCAATTCTAT TCTAAAGAAA AGGCAGACTG 001200
001201 AATGCTACAT GCCAGTAAGT AGAATCTCCA GGACTCAAAA ACAGACACAT GACATTAAAT GCAGTGCTCT TGCTACTACA 001280
001281 ACACACTGCC TCTGTATTCA GAGTTGCCTC AGCCTAGATC ATAGTTTTGG AGTGAGTTAG AACCTGATCC TAACACTTGA 001360
001361 CAGTATTAAA AGGGGGACTG TCACCAGTGG GACGAACCCT TGAACTAAGC ATGAGGAGAA CCTGGCTTAT GCCCTGGCTC 001440
001441 TGCCCTATCT GACTGATTGA GTAAATCATG AAATCACTCT GCATTTCTTT TTTTCAAAGT CATTGATACA AACCTATACT 001520
001521 TCTCAACTTT TCCCAATTAA GCTACTAGAA TCTTACATTA TTTTTCCCTA AGATGCTCAG ACATTCCTAT AATGTTATAC 001600
001601 GAGTCCGTGT TATAAGAGCC CCTCAACAAT AAGCGGTAGC TGATGAAACC ATATCAATAC ATAATTCTAT ACAAAGGTAA 001680
001681 GAAACTGGAA ACATTATTTG GCCTTCATAG ACCTTGCTTG GATAACTGCT CAATTTCTAT GAAGGTATCG GAATTATTGG 001760
001761 GAGGTGAAAT TGGCCACTCC CGTAACTATT TCTGCCGATC TCCAATTGGG AACCATAGAG CTTCATGACC TAAGGCTCCT 001840
001841 ACCAGTTACC ATCTGAAAAT GTCTTTTGTC TCTGTAATCT TGACAAGTGA ATTCCAGTCA CACCCATCCT AAGAAGAGTG 001920
001921 TGCCTGGAAA TACTGGTTTT CTTCTTCTCA AGCTGTCTGA ATCCAGAAGT ATATATTAAT CTGGAAGTGG CTGGAGGTGA 002000
002001 TGGAAAAGAG AGGATGTTGA AAAAAGCACC CTTGGTGAAG TGGAGCAGCA ACTCGCTCAG AAGCCTCATG AGTCTGTAAC 002080
002081 ATCGTTTGAA CTCCAAAGCT TTCTTCATCA CTCATAAATC CATAATCATC ACTCCACCTC GGAAAAATCT CACTCTGCTC 002160
002161 TTCTCTATCT TCTACATGAA ATGTATCAGG AAGAAAAATT AACATAAGGA ACTTTCACCA GCTTTATAAA ATCTTAACCC 002240
002241 TTTTGTACAC TTGTTTCTGA TAATTTTAAG AACTAATATC AATAATCATT AAAACGTTGA ACCGTGCCCA
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Predicted Small Protein

Name ENST00000563553.1_smProtein_233:421
Length 63
Molecular weight 7260.4778
Aromaticity 0.112903225806
Instability index 50.8887096774
Isoelectric point 11.2247924805
Runs 9
Runs residual 0.00847926267281
Runs probability 0.0433276413668
Amino acid sequence MQIARSTSYFSGILYLALCTLFRRVLFPRPRRGNTLKTTLSVGTKCTRIRSILTPWPEHD
RY
Secondary structure LLEEELLLLHHHHHHHHHHHHHHHHLLLLLLLLLLEEEEEEELLEEEEEEEELLLLLLLL
LL
PRMN -
PiMo -