ENST00000563495.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000563495.1

Source

Gencode19

Same with

lnc-PGPEP1L-3:1,NONHSAT050858

Classification

intronic(S)

Length

3910 nt

Genomic location

chr15-:99697436..99701345

Exon number

1

Exons

99697436..99701345

Genome context

Sequence
000001 TATATATATG TGTGTGCATA TATATGTATA TATGTATGTG TGCATGTATG CCCACACCCT CTTCTCAGCG CACCTAAGTC 000080
000081 CTGTTTACTT TTCACTCCTC TCCGTTAAGT TTTTTTTTTT TTTTTTTTGA GACAGAGTCT TGCTCTGTCA CCCAAGCTGG 000160
000161 AGTGCAGTGG TGCAATCTCA GCTCACTGCA ACCTCCGCCT CCTGGGTTCA AGCAATTTTC TGCCTCAGCC CCCCGAGTAG 000240
000241 CTGGGATTAC AGGCCCCCGC CACCATGCCC AGCTAATTTT TTTGTATTTT TAGTAGAGTT GGGGTTTCAC CATTTGGCTA 000320
000321 GGCTGATCTT GAACTCCTGA CCCCGTGATC CGCCCGCCTC AGCCTCCCAA AGTGCTGGGA TTACAGGCGT GAGCCACTGC 000400
000401 GCCCGGCCTC TGTTAAGCTT TTCTTATCAG AGGTTAACGC CATCTCAATT TCCTAGAAAA CCATACATAC ATACATATAT 000480
000481 ACACACTCAC ACACATATAT ATATAGTTGT TCCTCAGTAT CTGTGGGGGA TTGGTTCCAG AGCCCCCAAG GATATCAAAC 000560
000561 TCCAAGGATG CTCAAGCCCT TGTACAAAAT GGTGTCACAT TTGTATATAA CCTAGACAAA GCCTCCTGAA TACTTTATAT 000640
000641 CATCTCTAGA TTGCTTATAA TACCTAATAC AATGTAAATG CTATGGTAGT AGTTGTTACA CTGTATTTTT TATTTGTATT 000720
000721 GTTTTTATTG TTGTATTGTT ATTTTTATTG TTTTTTCCCA TATAATTTTT GATCTATGGA TATGGAGGGC TGACTATGTA 000800
000801 TTTTTTTCAA CTCTAACCTA TCATGGCAAA TCTTGGAAAT GAAAAACTTT ATTTCCCTTA CCGTCTGTAG ACCTCCTCCC 000880
000881 CCACAGCTCT TTTCTCATCC TTAATCCCCC CTCCACCCCC GCCTTCTGTC AGCTAGGGAA CACGGGCTTT TATGCCGATA 000960
000961 TACCTATGTT TCTCAGGCCA AAGTAGGGCC ACAATCACCA GGACAAATTG GAGTTTCAGG ATGTTTCTCA GTCACCCAAC 001040
001041 CCCAGGGAGA GAGAGGGGCC TTCCAGGGGC CTCAGACTCC CTCCCCATTC CCCCCTCACA TCTCTAGAAG ACAAGGGGAG 001120
001121 TGCTCAGGTC AGAATAATGG GGTAGGTTTG CCCCCTCATG CCCCACTCCA TCTAGTTCCT CAGCCATTTT TTCCTCCAAA 001200
001201 ATAGATCTTG AATGCATCCA TTGTTTTCCA TCTTTAGTCC TGCCACTCAT CATCTCTTGC CTGGACCGCT CTAACAAGTT 001280
001281 CCTATCTCTC AGCTGCTTTT TCCATGCTTG CCCTCTTCTA ATCCACTCAG AATAAGGAAG CCATGGTGAT GTTTCCAAAA 001360
001361 AGCAGATCTG ACCACTGAAC ACTCACTTGT AAAAGCCAGT CCACTGGCTC CCCGATGCCC TCAGGATAAA CCAGAATCCT 001440
001441 GACATGGCCC ACAGTACCGT CCACGACCTG GACTCCACTG ACATTTCCAG GCTCATTTTT GCCTCCTCTC CCTGATCCAT 001520
001521 GTTCCTGCCA CACTGGCCTT TTCTAATTCC CACTTCCGGG CAGTGCCAGC TTCTGTTTCC TCCTCCTGGA AGGCCCTTCC 001600
001601 TCATTCATCT CCAGGCCAAT GCTAACCCAT TCTTCATTTC TTACCAGCTT CTCTGATTCC TCTCCCCAGG CTTCATTAGA 001680
001681 TACTCCCCAT TATTCTTCCT TAGAGAATCC ATTTGATGTC ATCAAATATT TGTAAGTATA TATTCATGTG GATATTTAAC 001760
001761 ATCTATCTTG CAACTAGACC GAACCTGTGA AAGCAGAGAC CCTCTTGCCT GTGGTGAGGA GTGATGAGCA GAGAGGTGGA 001840
001841 TGCATGTTTG GCCACAGGCC AGCTGACTGT TCTGACTCCT GTGGGCCATG CATCAGTTCC CCTGTACTGC CTGGCTTCCC 001920
001921 ACCATAGTGT CTTGCTGAGT CAGCCAATGC TCAGTGTCAC TGATGCTATG CCTCACTGCC CTTGCCCAAG TCACCCAGAT 002000
002001 CAGTGTTGAT CAAAAGATGC ACCTCACTCT CCTAAGCTGC CCTCGAAGAT TTTAGCAAAC TGGCTCTTTT CATTCTAGGG 002080
002081 CCACTGCCAG CCCATCCAAT GCCCTTATCA TAATAGAAAA AGCTGCCCCT TCCTCAGGTA GATACCGCCC ATGTTGGAGA 002160
002161 GGACCATAGG CTGGATTTCA GCCCTCCCCA TGCTCCTGCC AGGCACCCTT GTGTGTGGCA CCACCTGCCC AGCCAAACAT 002240
002241 GGCAGTCTCA TGCTGTTCTC ACCATTTGGT TGCAAACCTC TCACTGTGGG TTCTAGCAGG TGTTGGCCAA CAAGGGCCGG 002320
002321 GCCCAGGGAC AGTCCCGGAG CCAAGAATGG GGCTGTGCTC AGGCCATCCC AGGTGTTCCC ACAGCACATG GCCATGGGCA 002400
002401 CTGTGGAACA TGATATTTGA GGGATGAAAT GCCTTTTAAG GTAAAATGTA AGTGAAGGTC ACTCTGCCAC AGGTTAAGCT 002480
002481 ACTCCGTGAG GGTTTGTCTT CTAGTTGTGC CACTCTTTTG CTCAAGAATC TTCTGTGACT TCCTCAGCCT GGCCACTCAC 002560
002561 TGGCCCTCAA CAGGCCATGT GTTCCTCCTG TGCTCCCAGT GGCCCATACC CTCTTCTCAT CCCACCTAAG TCCTCTTTAC 002640
002641 TCTTCACTCC TCTCTCTTAA GCTTTTCCTA GCAGAGGTTG ATACTATCTC AGTTTCCTAG AAACCCGTGC CATTTAACTT 002720
002721 CCTTCACATC TCCCCGTTTC CGCAGTCAGG CTGTAGGCGG CATCCAAAGC TTTATCTGGG AAAGGGAGTC TCCCCGGGTC 002800
002801 TTCTCCCCAT CACTGGCTCC TCTAAGTCTG ACAGTGATAT TTTCCCACAG AAATATCACC AAACCCAGCA CTCTCAGCAG 002880
002881 TCCAAGTCCT TGCTCTCAGA ACTTGGGAGA TGTGATGGGC TTTACCCTCA GGCAAGTCTA GATTTAAATT CTAGTCCCTC 002960
002961 ATGTACCTCA GTGGGGCCTC ACTGCTGAGT TACACAATCA CTCTGCCTCT ACAGAGATTC CTCTTTCACC TGAGAAATTT 003040
003041 ATTTCTGCCT CATCAGCACC TGTAATGTGG TTCCCCTACC CCGGCCCTAT CCCCTAACTT GTATTATTGC CAACAAAAGG 003120
003121 ATTAAACGCC CTCCTTGTCC TTCTGTTTGT GGAGCACTTT TGGGACCCCT TTGGGGCTGT GTCATGAGGA AGCTCCCATG 003200
003201 GTCCCTGCTG TATTTGCCAG TTAAATTCAG CATCCATGCT CTGCAGCTGA TGTCGTGCCT TCATGTGGAA GATCGTGGAA 003280
003281 GAATTTCTGG AGAAAGTATG GAGGATTGAC ATACTTTAAC AGGGTTTCCC CCTGCATATT TTGGTGTCTG AAGAAGCTAA 003360
003361 TATCAGGAAA TACTATGTCC TGACCAATTC ATAATTTTTA TTCCATGTTA GTATAAATAA ATTGGATAAA CCAAACAAAA 003440
003441 TGTCATGTCA TGTTGGAATG TTTACTTTCA GTTTCCTAAA CGATTTCCTA TGAGAATAGC CAAGCCTGGA GTGTGTTCAG 003520
003521 GATGTTCTAT ACATAGATAA TTTGCCCAGG AATGCTATAT TTTCACTTCT GTAAGAATAG CATTGTGGAC AGAGGGAGAA 003600
003601 AAGCATGGGA CTAAAATGTA TGAAAATTAG ACTGGGCATT GTGGCTCGCG CCTGTAATCC CAGCACTTTG GGATGCCAAG 003680
003681 GTGGGTGGAT CACTTGAGGT CAGGAGTTCA AGACCAGTCT GGCCAACATG GTGAAACCCT GTCTCTACTA AAAATACAAA 003760
003761 AATTAGCTGG GTATGGTGGT GGGCGCCTGC AATCCCAGCT ACTTGGGAGG ATGAGGCAGG AGAATCGCTT GAACCTGGGA 003840
003841 GGCAGAGGTT GCAGAGAGCT GAGATCATGC CACTGCACTC CAGGCTGGTA GACAAAGAGA GACTCTGTCT
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Predicted Small Protein

Name ENST00000563495.1_smProtein_2150:2419
Length 90
Molecular weight 9475.0822
Aromaticity 0.0561797752809
Instability index 42.6786516854
Isoelectric point 9.24517822266
Runs 17
Runs residual 0.0478078871998
Runs probability 0.0376570341968
Amino acid sequence MLERTIGWISALPMLLPGTLVCGTTCPAKHGSLMLFSPFGCKPLTVGSSRCWPTRAGPRD
SPGAKNGAVLRPSQVFPQHMAMGTVEHDI
Secondary structure LLEEEELHHHHLLLLLLLLEEELLLLLLLLLEEEEELLLLLLLLEELLLLLLLLLLLLLL
LLLLLLLEEELLLLLLLHHHLLLLEEELL
PRMN -
PiMo -