ENST00000563495.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000563495.1 |
Source |
Gencode19 |
Same with |
lnc-PGPEP1L-3:1,NONHSAT050858 |
Classification |
intronic(S) |
Length |
3910 nt |
Genomic location |
chr15-:99697436..99701345 |
Exon number |
1 |
Exons |
99697436..99701345 |
Genome context |
|
Sequence |
000001 TATATATATG TGTGTGCATA TATATGTATA TATGTATGTG TGCATGTATG CCCACACCCT CTTCTCAGCG CACCTAAGTC 000080
000081 CTGTTTACTT TTCACTCCTC TCCGTTAAGT TTTTTTTTTT TTTTTTTTGA GACAGAGTCT TGCTCTGTCA CCCAAGCTGG 000160 000161 AGTGCAGTGG TGCAATCTCA GCTCACTGCA ACCTCCGCCT CCTGGGTTCA AGCAATTTTC TGCCTCAGCC CCCCGAGTAG 000240 000241 CTGGGATTAC AGGCCCCCGC CACCATGCCC AGCTAATTTT TTTGTATTTT TAGTAGAGTT GGGGTTTCAC CATTTGGCTA 000320 000321 GGCTGATCTT GAACTCCTGA CCCCGTGATC CGCCCGCCTC AGCCTCCCAA AGTGCTGGGA TTACAGGCGT GAGCCACTGC 000400 000401 GCCCGGCCTC TGTTAAGCTT TTCTTATCAG AGGTTAACGC CATCTCAATT TCCTAGAAAA CCATACATAC ATACATATAT 000480 000481 ACACACTCAC ACACATATAT ATATAGTTGT TCCTCAGTAT CTGTGGGGGA TTGGTTCCAG AGCCCCCAAG GATATCAAAC 000560 000561 TCCAAGGATG CTCAAGCCCT TGTACAAAAT GGTGTCACAT TTGTATATAA CCTAGACAAA GCCTCCTGAA TACTTTATAT 000640 000641 CATCTCTAGA TTGCTTATAA TACCTAATAC AATGTAAATG CTATGGTAGT AGTTGTTACA CTGTATTTTT TATTTGTATT 000720 000721 GTTTTTATTG TTGTATTGTT ATTTTTATTG TTTTTTCCCA TATAATTTTT GATCTATGGA TATGGAGGGC TGACTATGTA 000800 000801 TTTTTTTCAA CTCTAACCTA TCATGGCAAA TCTTGGAAAT GAAAAACTTT ATTTCCCTTA CCGTCTGTAG ACCTCCTCCC 000880 000881 CCACAGCTCT TTTCTCATCC TTAATCCCCC CTCCACCCCC GCCTTCTGTC AGCTAGGGAA CACGGGCTTT TATGCCGATA 000960 000961 TACCTATGTT TCTCAGGCCA AAGTAGGGCC ACAATCACCA GGACAAATTG GAGTTTCAGG ATGTTTCTCA GTCACCCAAC 001040 001041 CCCAGGGAGA GAGAGGGGCC TTCCAGGGGC CTCAGACTCC CTCCCCATTC CCCCCTCACA TCTCTAGAAG ACAAGGGGAG 001120 001121 TGCTCAGGTC AGAATAATGG GGTAGGTTTG CCCCCTCATG CCCCACTCCA TCTAGTTCCT CAGCCATTTT TTCCTCCAAA 001200 001201 ATAGATCTTG AATGCATCCA TTGTTTTCCA TCTTTAGTCC TGCCACTCAT CATCTCTTGC CTGGACCGCT CTAACAAGTT 001280 001281 CCTATCTCTC AGCTGCTTTT TCCATGCTTG CCCTCTTCTA ATCCACTCAG AATAAGGAAG CCATGGTGAT GTTTCCAAAA 001360 001361 AGCAGATCTG ACCACTGAAC ACTCACTTGT AAAAGCCAGT CCACTGGCTC CCCGATGCCC TCAGGATAAA CCAGAATCCT 001440 001441 GACATGGCCC ACAGTACCGT CCACGACCTG GACTCCACTG ACATTTCCAG GCTCATTTTT GCCTCCTCTC CCTGATCCAT 001520 001521 GTTCCTGCCA CACTGGCCTT TTCTAATTCC CACTTCCGGG CAGTGCCAGC TTCTGTTTCC TCCTCCTGGA AGGCCCTTCC 001600 001601 TCATTCATCT CCAGGCCAAT GCTAACCCAT TCTTCATTTC TTACCAGCTT CTCTGATTCC TCTCCCCAGG CTTCATTAGA 001680 001681 TACTCCCCAT TATTCTTCCT TAGAGAATCC ATTTGATGTC ATCAAATATT TGTAAGTATA TATTCATGTG GATATTTAAC 001760 001761 ATCTATCTTG CAACTAGACC GAACCTGTGA AAGCAGAGAC CCTCTTGCCT GTGGTGAGGA GTGATGAGCA GAGAGGTGGA 001840 001841 TGCATGTTTG GCCACAGGCC AGCTGACTGT TCTGACTCCT GTGGGCCATG CATCAGTTCC CCTGTACTGC CTGGCTTCCC 001920 001921 ACCATAGTGT CTTGCTGAGT CAGCCAATGC TCAGTGTCAC TGATGCTATG CCTCACTGCC CTTGCCCAAG TCACCCAGAT 002000 002001 CAGTGTTGAT CAAAAGATGC ACCTCACTCT CCTAAGCTGC CCTCGAAGAT TTTAGCAAAC TGGCTCTTTT CATTCTAGGG 002080 002081 CCACTGCCAG CCCATCCAAT GCCCTTATCA TAATAGAAAA AGCTGCCCCT TCCTCAGGTA GATACCGCCC ATGTTGGAGA 002160 002161 GGACCATAGG CTGGATTTCA GCCCTCCCCA TGCTCCTGCC AGGCACCCTT GTGTGTGGCA CCACCTGCCC AGCCAAACAT 002240 002241 GGCAGTCTCA TGCTGTTCTC ACCATTTGGT TGCAAACCTC TCACTGTGGG TTCTAGCAGG TGTTGGCCAA CAAGGGCCGG 002320 002321 GCCCAGGGAC AGTCCCGGAG CCAAGAATGG GGCTGTGCTC AGGCCATCCC AGGTGTTCCC ACAGCACATG GCCATGGGCA 002400 002401 CTGTGGAACA TGATATTTGA GGGATGAAAT GCCTTTTAAG GTAAAATGTA AGTGAAGGTC ACTCTGCCAC AGGTTAAGCT 002480 002481 ACTCCGTGAG GGTTTGTCTT CTAGTTGTGC CACTCTTTTG CTCAAGAATC TTCTGTGACT TCCTCAGCCT GGCCACTCAC 002560 002561 TGGCCCTCAA CAGGCCATGT GTTCCTCCTG TGCTCCCAGT GGCCCATACC CTCTTCTCAT CCCACCTAAG TCCTCTTTAC 002640 002641 TCTTCACTCC TCTCTCTTAA GCTTTTCCTA GCAGAGGTTG ATACTATCTC AGTTTCCTAG AAACCCGTGC CATTTAACTT 002720 002721 CCTTCACATC TCCCCGTTTC CGCAGTCAGG CTGTAGGCGG CATCCAAAGC TTTATCTGGG AAAGGGAGTC TCCCCGGGTC 002800 002801 TTCTCCCCAT CACTGGCTCC TCTAAGTCTG ACAGTGATAT TTTCCCACAG AAATATCACC AAACCCAGCA CTCTCAGCAG 002880 002881 TCCAAGTCCT TGCTCTCAGA ACTTGGGAGA TGTGATGGGC TTTACCCTCA GGCAAGTCTA GATTTAAATT CTAGTCCCTC 002960 002961 ATGTACCTCA GTGGGGCCTC ACTGCTGAGT TACACAATCA CTCTGCCTCT ACAGAGATTC CTCTTTCACC TGAGAAATTT 003040 003041 ATTTCTGCCT CATCAGCACC TGTAATGTGG TTCCCCTACC CCGGCCCTAT CCCCTAACTT GTATTATTGC CAACAAAAGG 003120 003121 ATTAAACGCC CTCCTTGTCC TTCTGTTTGT GGAGCACTTT TGGGACCCCT TTGGGGCTGT GTCATGAGGA AGCTCCCATG 003200 003201 GTCCCTGCTG TATTTGCCAG TTAAATTCAG CATCCATGCT CTGCAGCTGA TGTCGTGCCT TCATGTGGAA GATCGTGGAA 003280 003281 GAATTTCTGG AGAAAGTATG GAGGATTGAC ATACTTTAAC AGGGTTTCCC CCTGCATATT TTGGTGTCTG AAGAAGCTAA 003360 003361 TATCAGGAAA TACTATGTCC TGACCAATTC ATAATTTTTA TTCCATGTTA GTATAAATAA ATTGGATAAA CCAAACAAAA 003440 003441 TGTCATGTCA TGTTGGAATG TTTACTTTCA GTTTCCTAAA CGATTTCCTA TGAGAATAGC CAAGCCTGGA GTGTGTTCAG 003520 003521 GATGTTCTAT ACATAGATAA TTTGCCCAGG AATGCTATAT TTTCACTTCT GTAAGAATAG CATTGTGGAC AGAGGGAGAA 003600 003601 AAGCATGGGA CTAAAATGTA TGAAAATTAG ACTGGGCATT GTGGCTCGCG CCTGTAATCC CAGCACTTTG GGATGCCAAG 003680 003681 GTGGGTGGAT CACTTGAGGT CAGGAGTTCA AGACCAGTCT GGCCAACATG GTGAAACCCT GTCTCTACTA AAAATACAAA 003760 003761 AATTAGCTGG GTATGGTGGT GGGCGCCTGC AATCCCAGCT ACTTGGGAGG ATGAGGCAGG AGAATCGCTT GAACCTGGGA 003840 003841 GGCAGAGGTT GCAGAGAGCT GAGATCATGC CACTGCACTC CAGGCTGGTA GACAAAGAGA GACTCTGTCT |
Predicted Small Protein
Name | ENST00000563495.1_smProtein_2150:2419 |
Length | 90 |
Molecular weight | 9475.0822 |
Aromaticity | 0.0561797752809 |
Instability index | 42.6786516854 |
Isoelectric point | 9.24517822266 |
Runs | 17 |
Runs residual | 0.0478078871998 |
Runs probability | 0.0376570341968 |
Amino acid sequence | MLERTIGWISALPMLLPGTLVCGTTCPAKHGSLMLFSPFGCKPLTVGSSRCWPTRAGPRD SPGAKNGAVLRPSQVFPQHMAMGTVEHDI |
Secondary structure | LLEEEELHHHHLLLLLLLLEEELLLLLLLLLEEEEELLLLLLLLEELLLLLLLLLLLLLL LLLLLLLEEELLLLLLLHHHLLLLEEELL |
PRMN | - |
PiMo | - |