ENST00000562613.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000562613.1

Source

Gencode19

Same with

lnc-LIMS3-2:9,NONHSAT073185

Classification

intergenic

Length

552 nt

Genomic location

chr2+:111003274..111041345

Exon number

5

Exons

111003274..111003370,111019009..111019090,111020228..111020342,111037183..111037350,111041256..111041345

Genome context

Sequence
000001 GCTCGCCGCG CCCGCCGCCG CGATGTCCGG GGCCGGCCTA GCCGCGGTGG TGAGCTGCCT GCGCCCGCAG CCCGGCGAGG 000080
000081 AGCCGCAGAC CCATGAGGAC CTTCTCCTGG CAGCTGCCTA TGTTTTGGAT GCCCAGTACA ACAGAAATGT TCCATTTGAA 000160
000161 ACTCACCTCA GGCCATCAGA CGTTACTATT TTTATAACCA CTAGACAACG CAGGTTGCCG CATACTTCTT TATTTGTGTA 000240
000241 GACCTCGCTC TTGCCCTGTT TGAAGAGTCT GAGTTGCTTC CCCTGCCTTT CTTGATATTT GGGTTCTTGG TCTGGACCAT 000320
000321 GGTAGCCGCC ACCCACATAG TATACCCCTT GCTGCAAGGA TGGGTGATGT ATGTCTCACT CACCTCGTTT CTCATCTCCT 000400
000401 TGATGTTCCT GTTGTCTTAC TTGTTTGGAT TTTACAAAAG ATTTGAATCC TGGAGAGTTC TGGACAGCCT GTACCACGGG 000480
000481 ACCACTGGCA TCCTGTACAT GAGCGCTGCC GTCCTACAAG TACATGCCAC GATTGTTTCT GAGAAACTGC TG
[back to top]

Predicted Small Protein

Name ENST00000562613.1_smProtein_92:196
Length 35
Molecular weight 4144.902
Aromaticity 0.176470588235
Instability index 40.7882352941
Isoelectric point 8.53839111328
Runs 8
Runs residual 0.0491437081162
Runs probability 0.0301956368132
Amino acid sequence MRTFSWQLPMFWMPSTTEMFHLKLTSGHQTLLFL
Secondary structure LLEEELLLLLLLLLLLLHHHHHHHLLLLHHHEEL
PRMN -
PiMo -