ENST00000561134.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000561134.1

Source

Gencode19

Same with

lnc-SLA2-2:1,NONHSAT079576

Classification

overlapping(AS),antisense

Length

714 nt

Genomic location

chr20-:35177530..35232932

Exon number

2

Exons

35177530..35178221,35232911..35232932

Genome context

Sequence
000001 TATCTTTTTT TTTTTTAAAC AGTGCTCAGT CCTCTATTGG AGATTCTGCC CCCTCTGGGA CAGATGTCCA CGCTGCCCGC 000080
000081 GACTCCTGAG CACACTCCCA TGGCGGGTGG CGTGCTCTGG GTGGGTGTGC GGCAGTGGCC GGTCAGGGTG TAGGGAAGGG 000160
000161 GACTGAGAGG GGACCTTGGT GAGCTTGCAT TTGTGTGGGG ATACACGTGA AGGGGTGTCT GATCCCAGGA CTCAGGGCCT 000240
000241 CTTCCTCCTG GGGGGCACAC AGAGCCCCTT CCCTTCCTCC TCGGGGAACA GCCCCGGAAT GGGGCCTTCC CTTGGTGCCT 000320
000321 CTAGGTCCTG CCCTCCAGCC CATGTCCCCA GAAGGTGGTC TTTCCTTGGA GGGGTCAGAG ACTATAGCCC AGGGCTCTGG 000400
000401 GGTCACTGTG GGAACATCTG CCTCAGCTCG GCACGCACTT CTCCTGGCCT GTTTCTTCCA CTGGGAACTG GGACCCTAAC 000480
000481 CCCTCAAAGG GGGATCCCTG AGCGAGGGTC ATGGGCAGGG AGCTGGTATG GACGGGTGTG TGCGGGGAGG GGTGACTGGC 000560
000561 GGGGGCTGGG GTGTCAGGGG GCTGGGGTGG CCTAGTCGTC TTTATCCTTG GCGCCATGTT TGAGGATGCG GGTGAACTCC 000640
000641 ACGTAGTTGA AGTTGCCTTT CTTATCAATG GGTGCCTCCC GGTACATCTC GTCCACTTCC TCATCTGTGA AGCG
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Predicted Small Protein

Name ENST00000561134.1_smProtein_341:478
Length 46
Molecular weight 4573.0809
Aromaticity 0.0666666666667
Instability index 47.9355555556
Isoelectric point 4.86822509766
Runs 7
Runs residual 0.00669191919192
Runs probability 0.0140686905393
Amino acid sequence MSPEGGLSLEGSETIAQGSGVTVGTSASARHALLLACFFHWELGP
Secondary structure LLLLLLLLLLLLEEEELLLLEEELLLHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -