ENST00000560153.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000560153.1 |
Source |
Gencode19 |
Same with |
lnc-AGBL1-4:1,NONHSAT048149 |
Classification |
intergenic |
Length |
1786 nt |
Genomic location |
chr15+:88120160..88122917 |
Exon number |
3 |
Exons |
88120160..88120278,88120941..88120995,88121306..88122917 |
Genome context |
|
Sequence |
000001 ACTCAGCTCT CTCACCATGC GATTGCCCTG CAACACCTTG GAACTCTGCA GAGAGTCCCC AGCAGGAAGG TCTCACCTGA 000080
000081 GGTGAACCTT CGACCTTGGA CTTCTCAGCC TCCAGAATGA AGAATGGCAA CCATCAAATC AAGAAATTGG CCCAAAGCCC 000160 000161 TACAGTCTGC AAACATCATA ACAATTCATC CTGAAGTTTC TCCATGAATT GTGATGCTTT GCTACATCAT TCTGCAATCC 000240 000241 CAGAAGATTT TTTGCATATT TTTTTGCTAT TACAGAAAAA TCTCAGTCTC CCTCCCTCTC TCTCTCTCTC AATCTGTGTG 000320 000321 TCTCTTTTAC TCCATATCTC TGTGTGTGTC TCTTTTACTC CATATCTCTC TGTGTGTGTC TGTTTATGTC TCTCTCTCTC 000400 000401 TCTCATCCTT CCCATGTTTC TCTCTCACAC ACACACACAC TCATTCACAG CTTTCAAAAG ACACGTCTGT CCTTACCTTC 000480 000481 ACTTTTTGTT TTAAACAGCA CACTCACTTT ACTCTGAACT ATACCTCACA TGCACACGAG CTTTCTGCTC CATCTGTTCA 000560 000561 TCCCACATGT GTCTTCACAT TCAAAGCAGC ACCTTCCCCA AGACCAGCTA CCTAACCACC TCCCACCTCC ACCCCATCCC 000640 000641 TAGTCAGAGG AAGGCCTGGT TCCCACCTGA ATTCAGCTTT GTCAAAGAGC CTCCTGGAAA GCTGTCATCT TCAGTTAGTA 000720 000721 GGGATAATGG GATTATTCTA TCTGTGTAAT AATAACATGT TCAATTTAAA GAAAAAAATC TGAAGCCACT TAAAAGCTAC 000800 000801 TGTTTGGCAC CGATACATTA TTCCAGTAAT GAATAATCAT TAAAGATATT ATTCTGGATG CAGTTACCAT GCAGTGATGT 000880 000881 GAATAAAATG CATTAGATGG AAAATTGTAT TTCAAGTAAA TATATGCACT GGTAGAAATG TATTACCACC CACTAATATG 000960 000961 TATTAATTCA AAACCAAATG CCAACTGGAG TTCGCCTACA CGGGTTTGAA TGGCAGGCAG TGATTTGGAA GTGGGAGGAA 001040 001041 ATAGGTTTGG ATTTGGTCAA ATAGACTGAG AAGTGATAGT GGGGGCGGGG GTTTATGACT CAAACTTTAA CAGGTGAGAA 001120 001121 GACTATGCCA TGGACAGAAC AGGCATGAGG GGCTCCCCTC CTACGCCTCT TTAAGAGATT TTTATCTCTG ACTAAGGATT 001200 001201 ACTGGTAGTT GTTGACATTT CTGAAGCAGT GGATCTTTTT CCTTTTTCAC TATCTGCATC TTCAAATATT CTTTTCTGAA 001280 001281 GAAAGTTAAA AGGAAGCCTG TACATTTTTT GCTAAGGTAA ATGCCTTGCC ATCTTATTTC ATTTTCTCAT TTTTTTCTTC 001360 001361 AGTGCACAAC ATAAGCAACT GTCCTCCTTG TCATACTCAA GATGAGCTTG GCATATCTGA AATCTGCAGG GATTTTCTCA 001440 001441 TTAGCACAGG GTTCCAAGCC CAAACCGTGA AGATGGAGTT TTCATTTTTA AATGGCACAT CTTCAAGTTC TTGCCCTGTC 001520 001521 CTCACTTTAG TATGCCCCAG AGGAAGTCAA AGATATGGAC ACTCTAAGAC TCAGAAGAAC TTTCTCAGGC ATTCATTTTC 001600 001601 CTATCTATTT TGAGCCATTT TATTTAAAAG GTTACAATTT TAAACCTCTC TTTAATTAAA AGATACCAGA GTTACAATGC 001680 001681 AATACTATTT GGCAATCAAA ACTAATGAAG CACAGATGCA TGCTACAACA CGAATGAACT TTGAAACGTT GTGTTAAGTG 001760 001761 AAATAAACCA GTTATTATAC AAGGCC |
Predicted Small Protein
Name | ENST00000560153.1_smProtein_203:493 |
Length | 97 |
Molecular weight | 10850.9382 |
Aromaticity | 0.104166666667 |
Instability index | 40.9770833333 |
Isoelectric point | 7.09515380859 |
Runs | 17 |
Runs residual | 0.0428479381443 |
Runs probability | 0.0421927117429 |
Amino acid sequence | MNCDALLHHSAIPEDFLHIFLLLQKNLSLPPSLSLSICVSLLLHISVCVSFTPYLSVCVC LCLSLSLILPMFLSHTHTHSFTAFKRHVCPYLHFLF |
Secondary structure | LLHHHHHHHLLLHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHLLLEEEELLLLHHHLHH HHHHHHHHHHHHHHLLLLLLHHHHHHHHLHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHH HHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTT TTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiii |