ENST00000560153.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000560153.1

Source

Gencode19

Same with

lnc-AGBL1-4:1,NONHSAT048149

Classification

intergenic

Length

1786 nt

Genomic location

chr15+:88120160..88122917

Exon number

3

Exons

88120160..88120278,88120941..88120995,88121306..88122917

Genome context

Sequence
000001 ACTCAGCTCT CTCACCATGC GATTGCCCTG CAACACCTTG GAACTCTGCA GAGAGTCCCC AGCAGGAAGG TCTCACCTGA 000080
000081 GGTGAACCTT CGACCTTGGA CTTCTCAGCC TCCAGAATGA AGAATGGCAA CCATCAAATC AAGAAATTGG CCCAAAGCCC 000160
000161 TACAGTCTGC AAACATCATA ACAATTCATC CTGAAGTTTC TCCATGAATT GTGATGCTTT GCTACATCAT TCTGCAATCC 000240
000241 CAGAAGATTT TTTGCATATT TTTTTGCTAT TACAGAAAAA TCTCAGTCTC CCTCCCTCTC TCTCTCTCTC AATCTGTGTG 000320
000321 TCTCTTTTAC TCCATATCTC TGTGTGTGTC TCTTTTACTC CATATCTCTC TGTGTGTGTC TGTTTATGTC TCTCTCTCTC 000400
000401 TCTCATCCTT CCCATGTTTC TCTCTCACAC ACACACACAC TCATTCACAG CTTTCAAAAG ACACGTCTGT CCTTACCTTC 000480
000481 ACTTTTTGTT TTAAACAGCA CACTCACTTT ACTCTGAACT ATACCTCACA TGCACACGAG CTTTCTGCTC CATCTGTTCA 000560
000561 TCCCACATGT GTCTTCACAT TCAAAGCAGC ACCTTCCCCA AGACCAGCTA CCTAACCACC TCCCACCTCC ACCCCATCCC 000640
000641 TAGTCAGAGG AAGGCCTGGT TCCCACCTGA ATTCAGCTTT GTCAAAGAGC CTCCTGGAAA GCTGTCATCT TCAGTTAGTA 000720
000721 GGGATAATGG GATTATTCTA TCTGTGTAAT AATAACATGT TCAATTTAAA GAAAAAAATC TGAAGCCACT TAAAAGCTAC 000800
000801 TGTTTGGCAC CGATACATTA TTCCAGTAAT GAATAATCAT TAAAGATATT ATTCTGGATG CAGTTACCAT GCAGTGATGT 000880
000881 GAATAAAATG CATTAGATGG AAAATTGTAT TTCAAGTAAA TATATGCACT GGTAGAAATG TATTACCACC CACTAATATG 000960
000961 TATTAATTCA AAACCAAATG CCAACTGGAG TTCGCCTACA CGGGTTTGAA TGGCAGGCAG TGATTTGGAA GTGGGAGGAA 001040
001041 ATAGGTTTGG ATTTGGTCAA ATAGACTGAG AAGTGATAGT GGGGGCGGGG GTTTATGACT CAAACTTTAA CAGGTGAGAA 001120
001121 GACTATGCCA TGGACAGAAC AGGCATGAGG GGCTCCCCTC CTACGCCTCT TTAAGAGATT TTTATCTCTG ACTAAGGATT 001200
001201 ACTGGTAGTT GTTGACATTT CTGAAGCAGT GGATCTTTTT CCTTTTTCAC TATCTGCATC TTCAAATATT CTTTTCTGAA 001280
001281 GAAAGTTAAA AGGAAGCCTG TACATTTTTT GCTAAGGTAA ATGCCTTGCC ATCTTATTTC ATTTTCTCAT TTTTTTCTTC 001360
001361 AGTGCACAAC ATAAGCAACT GTCCTCCTTG TCATACTCAA GATGAGCTTG GCATATCTGA AATCTGCAGG GATTTTCTCA 001440
001441 TTAGCACAGG GTTCCAAGCC CAAACCGTGA AGATGGAGTT TTCATTTTTA AATGGCACAT CTTCAAGTTC TTGCCCTGTC 001520
001521 CTCACTTTAG TATGCCCCAG AGGAAGTCAA AGATATGGAC ACTCTAAGAC TCAGAAGAAC TTTCTCAGGC ATTCATTTTC 001600
001601 CTATCTATTT TGAGCCATTT TATTTAAAAG GTTACAATTT TAAACCTCTC TTTAATTAAA AGATACCAGA GTTACAATGC 001680
001681 AATACTATTT GGCAATCAAA ACTAATGAAG CACAGATGCA TGCTACAACA CGAATGAACT TTGAAACGTT GTGTTAAGTG 001760
001761 AAATAAACCA GTTATTATAC AAGGCC
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Predicted Small Protein

Name ENST00000560153.1_smProtein_203:493
Length 97
Molecular weight 10850.9382
Aromaticity 0.104166666667
Instability index 40.9770833333
Isoelectric point 7.09515380859
Runs 17
Runs residual 0.0428479381443
Runs probability 0.0421927117429
Amino acid sequence MNCDALLHHSAIPEDFLHIFLLLQKNLSLPPSLSLSICVSLLLHISVCVSFTPYLSVCVC
LCLSLSLILPMFLSHTHTHSFTAFKRHVCPYLHFLF
Secondary structure LLHHHHHHHLLLHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHLLLEEEELLLLHHHLHH
HHHHHHHHHHHHHHLLLLLLHHHHHHHHLHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHH
HHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTT
TTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiii