ENST00000560146.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000560146.1

Source

Gencode19

Same with

lnc-TRIM29-1:3

Classification

intronic(AS)

Length

730 nt

Genomic location

chr11-:120127185..120136641

Exon number

4

Exons

120127185..120127702,120131998..120132028,120136036..120136149,120136575..120136641

Genome context

Sequence
000001 AGATGATGAG GAGGCACCAG CAAAAGAGAC TGAGAAAGAG TGGGCAGGCA AATGGAAGAA AGACCGGGCA CAATGAAGGG 000080
000081 CAGGATTAGA GTGCAGGGGC CAGCCATGCC CTCCCGGGAG ACTGGCCCCT AGCGCTGCCG GAGGGCAGAG AGTGGCACAT 000160
000161 GGCTCAGCCT TTGGCACTCA GGTGAGGAAA CTGAGCCTGA GACCGAACAA GGATGAGGAA ACTTGAGGCT CAGAATGGTT 000240
000241 AATTACCTCG CCTAAGGTTA CTGATTAATA AATCACTGAG TAGAGACTGA AACCCACATC TGTCTACCAG CAAAGGCTGT 000320
000321 CCATACTACA CCATGTTATC TCCAAATGAA ACCTCATATG AAGTTGCTGC AGAAACTCTA TGGGAAAAAA AGACTTTTAG 000400
000401 ATCTTCTGGA ACTACAACAT CTAGTCTCCG TGAATCTGCA CCATCTCTTA GCACTGGGTC CTGGGAGGAG GGGGTGCTTC 000480
000481 CACCAGCTCC CTCCCCTTCT TCCTGCCATG TTCCTACTTC CTAAGAAGCA AAGACAAACT TGAGTTAGGA TCAACATGAG 000560
000561 GAGCCCACAG TGGGTTAATG TGACAGATGC ATCTCCCTGG GTGGCAGAGT GGGCTTCTTG TGGGGTGACA GTCACTGAAG 000640
000641 TATGCTTCCA ACTCGAGAGT CCTGGACATG TGTGGACACG ACAGTGTGCT GACCACGAGT GAATGTATAG GCAAGTCTTC 000720
000721 CTGGAAAACA
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Predicted Small Protein

Name ENST00000560146.1_smProtein_332:523
Length 64
Molecular weight 6685.2432
Aromaticity 0.0634920634921
Instability index 90.9142857143
Isoelectric point 4.84014892578
Runs 9
Runs residual 0.00210560414642
Runs probability 0.0288425680582
Amino acid sequence MLSPNETSYEVAAETLWEKKTFRSSGTTTSSLRESAPSLSTGSWEEGVLPPAPSPSSCHV
PTS
Secondary structure LLLLLLLLHHHHHHHHHHHHLEELLLLLLHHHHLLLLLLLLLLEEELLLLLLLLLLLLLL
LLL
PRMN -
PiMo -