ENST00000560146.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000560146.1 |
Source |
Gencode19 |
Same with |
lnc-TRIM29-1:3 |
Classification |
intronic(AS) |
Length |
730 nt |
Genomic location |
chr11-:120127185..120136641 |
Exon number |
4 |
Exons |
120127185..120127702,120131998..120132028,120136036..120136149,120136575..120136641 |
Genome context |
|
Sequence |
000001 AGATGATGAG GAGGCACCAG CAAAAGAGAC TGAGAAAGAG TGGGCAGGCA AATGGAAGAA AGACCGGGCA CAATGAAGGG 000080
000081 CAGGATTAGA GTGCAGGGGC CAGCCATGCC CTCCCGGGAG ACTGGCCCCT AGCGCTGCCG GAGGGCAGAG AGTGGCACAT 000160 000161 GGCTCAGCCT TTGGCACTCA GGTGAGGAAA CTGAGCCTGA GACCGAACAA GGATGAGGAA ACTTGAGGCT CAGAATGGTT 000240 000241 AATTACCTCG CCTAAGGTTA CTGATTAATA AATCACTGAG TAGAGACTGA AACCCACATC TGTCTACCAG CAAAGGCTGT 000320 000321 CCATACTACA CCATGTTATC TCCAAATGAA ACCTCATATG AAGTTGCTGC AGAAACTCTA TGGGAAAAAA AGACTTTTAG 000400 000401 ATCTTCTGGA ACTACAACAT CTAGTCTCCG TGAATCTGCA CCATCTCTTA GCACTGGGTC CTGGGAGGAG GGGGTGCTTC 000480 000481 CACCAGCTCC CTCCCCTTCT TCCTGCCATG TTCCTACTTC CTAAGAAGCA AAGACAAACT TGAGTTAGGA TCAACATGAG 000560 000561 GAGCCCACAG TGGGTTAATG TGACAGATGC ATCTCCCTGG GTGGCAGAGT GGGCTTCTTG TGGGGTGACA GTCACTGAAG 000640 000641 TATGCTTCCA ACTCGAGAGT CCTGGACATG TGTGGACACG ACAGTGTGCT GACCACGAGT GAATGTATAG GCAAGTCTTC 000720 000721 CTGGAAAACA |
Predicted Small Protein
Name | ENST00000560146.1_smProtein_332:523 |
Length | 64 |
Molecular weight | 6685.2432 |
Aromaticity | 0.0634920634921 |
Instability index | 90.9142857143 |
Isoelectric point | 4.84014892578 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0288425680582 |
Amino acid sequence | MLSPNETSYEVAAETLWEKKTFRSSGTTTSSLRESAPSLSTGSWEEGVLPPAPSPSSCHV PTS |
Secondary structure | LLLLLLLLHHHHHHHHHHHHLEELLLLLLHHHHLLLLLLLLLLEEELLLLLLLLLLLLLL LLL |
PRMN | - |
PiMo | - |