ENST00000560054.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000560054.1 |
Source |
Gencode19 |
Same with |
lnc-MEX3B-4:2,NONHSAT047751 |
Classification |
intergenic |
Length |
569 nt |
Genomic location |
chr15-:81952823..82090465 |
Exon number |
3 |
Exons |
81952823..81953051,81954341..81954479,82090265..82090465 |
Genome context |
|
Sequence |
000001 GAGGCAATGC CTCGCCCTGC TTCGGCTCGC GCACGGTGCG CGCACCCACT GACCTGCGCC CACTGTCTGG CACTCCCTAG 000080
000081 TGAGATGAAC CCGGTACCTC AGATGGAAAT GCAGAAATCA CCCGTCTTCT GCGTCGCTCA CGCTGGGAGC TGTAGACCGG 000160 000161 AGCTGTTCCT ATTCGGCCAT CTTGGCTCCT CCTCGAAATG GCAACGCATA TGGCTAATAA AACATATTGA GGATGAATGA 000240 000241 GAAAACAACC TGGTTCCTGG AAGGAGAGAA ACAAGGTGGA GTCTTCTCAC AGAAACAAGG AGAAGGTCAG AGAGACCTCC 000320 000321 GGGAGCATCT CATCTTGGAG ACACCACAAG CTCAAGAGGC TGCATTAGCG TTTTTTATTG GAGGCATTTT CTTTTCCTCC 000400 000401 AGATTTTGTT TTTGACTGTT AAGGTCATAG CTACAAACAA TTGATCAAGC CTAAAAGGGC ATTTATAAAC CACCTGCATC 000480 000481 TACATTTTTT TCTTACTGTG GATGGATTTA AAAAGCCGTT TCAAGATGAA ATCTTATGAG TCATTATCAT GTCTTCTGAG 000560 000561 GGCTGAGAT |
Predicted Small Protein
Name | ENST00000560054.1_smProtein_236:367 |
Length | 44 |
Molecular weight | 5236.8966 |
Aromaticity | 0.046511627907 |
Instability index | 57.8511627907 |
Isoelectric point | 11.4224243164 |
Runs | 6 |
Runs residual | 0.0177684870656 |
Runs probability | 0.0200936230348 |
Amino acid sequence | MRKQPGSWKERNKVESSHRNKEKVRETSGSISSWRHHKLKRLH |
Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHEEELLLLLLHHHHHHHHLLL |
PRMN | - |
PiMo | - |