ENST00000559841.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000559841.1 |
Source |
Gencode19 |
Same with |
lnc-RAD51-1:1,NONHSAT041862 |
Classification |
sense |
Length |
516 nt |
Genomic location |
chr15+:40935131..40939055 |
Exon number |
2 |
Exons |
40935131..40935504,40938914..40939055 |
Genome context |
|
Sequence |
000001 GTTTATTTTG AATGAAACGG GATCTTACAC TCAATGAGCG GTAGGTTTAG TTGTGCTTTA CTGTTTGATT TTGCATCTGT 000080
000081 ATGCCTGCAT ATATCCTCTA CAAGAGATAT TCTATCTCTG TTAGAAATTT ATTTTCTCCA TTTATTAACA AAAGACTAAT 000160 000161 ATATATTGAG ACTATCATAA CTTTGCTGCT TTTATAGATG CTATTCTAAA AATGTGAAAT ATGCCTTTGA ACTGAATTGG 000240 000241 AAACTTTTAT TTTATTTTTT ATTTTTATTT TTGAGACAGA GCCTCACTCT GTCACCCAGG CGCGATCTCG GCTTACTGAG 000320 000321 AACTCTGCCT CCTGGGTTGA CGCCATTCTC CTGCCTCAAC CTCTACTACT ACAGGCATGG TGGCAGGCAC CTGTAGTCCC 000400 000401 AGCTAATCAG GAGGCTGAGG CAGGAGAATG GCATGAACCC GGGAGGCGGA GCTTGCAATG AGCCCAGATG GCGCCACTGC 000480 000481 ACTCCAGCCT GGGTAACAGA ATGAGACTCC GCCTCA |
Predicted Small Protein
Name | ENST00000559841.1_smProtein_80:196 |
Length | 39 |
Molecular weight | 4590.558 |
Aromaticity | 0.157894736842 |
Instability index | 84.2842105263 |
Isoelectric point | 9.99188232422 |
Runs | 8 |
Runs residual | 0.0379155124654 |
Runs probability | 0.0118353647765 |
Amino acid sequence | MPAYILYKRYSISVRNLFSPFINKRLIYIETIITLLLL |
Secondary structure | LLEEEEEELEEEEHHHHLLHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo |