ENST00000557966.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000557966.1 |
Source |
Gencode19 |
Same with |
lnc-RP11-809H16.2.1-1:1 |
Classification |
intergenic |
Length |
1117 nt |
Genomic location |
chr15+:69222843..69321229 |
Exon number |
4 |
Exons |
69222843..69223056,69267068..69267171,69318868..69318991,69320555..69321229 |
Genome context |
|
Sequence |
000001 GCTTGCGCGC TGGGGACAAC CGTTGCTGGG TGTCCCAGGG CCTGAGGCAG GACGGTACTC CGCTGACACC TTCCCTTTCG 000080
000081 GCCTTGAGGT TCCCAGCCTG GTGGCCCCAG GACGTTCCGG TCGCATGGCA GAGTGCTACG GACGACGCCT ATGAAGCCCT 000160 000161 TAGTCCTTCT AGTTGCGCTT TTGCTATGGC CTTCGTCTGT GCCGGCTTAT CCGAGGTCTC AATCCATTGC GCCCAGGCTG 000240 000241 GTATGCAGTC ATGTTGTATC TGGAATTGGT GGGTTCTTGG TCTCACTGAC TTCAAGAATG AAGCCGCAGA CCCTCGTGCA 000320 000321 CCATGAGTGC CGAGGAGGAT GCCAGGTGGC TCCGGTGGGT GACTCAGCAG TTTAAGACCA TTGCAGGAGA AGATGGGGAG 000400 000401 ATCAGCCTGC AAGAATTCAA AGCAGCTCTG CATGTGAAAG AGTCCTTCTT TGCAGAGCGA TTCTTTGCCC TATTTGACTC 000480 000481 CGATAGAAGT GGCACCATCA CCCTCCAGGA GCTGCAGGAG GCACTGACCC TGCTCATCCA TGGCAGCCCC ATGGACAAAC 000560 000561 TCAAATTCCT CTTCCAGGTG TATGACATCG ATGGTAAGGG CTCTTCCTGG GTGTGGGCTG GGGTGGGGAG ATCAGTGGGC 000640 000641 CTCAGTGAGA ACTGGCCATT TCACCTTGGC AGGCCTGGAG GTGCCATCCC GGCCTCCTGA GCCCAGCCTG GGACTGGTTT 000720 000721 CTCCAGGTGA GGCTGACACT TCCTTTCCTC ACATCTCTCT CCCAGTCCCC AGTCTCTCTG TCTAATCCCT GCCCCCCTTT 000800 000801 CTGGGGCAGC AGGGAGAAAA GGAGGGACTC TGGCACAGGA GACAAATGCC TTCTATTCAA CTTACCAGAG GCCAGAACCT 000880 000881 TTTTCTGATC TTTTCTATGT CTGAAAAAGA AAATCTCTGT TGTTTTTTCC TTTTCCTCAT AGTATAAGCT CACTATGAAC 000960 000961 ATTTTAGACA ATACAGAGTG GTATAAAAAA GAATACAAAA ATCACCCGTA ACATTTTGCT ATATTGCCTT CTAACTGGTT 001040 001041 GCACATACAC ACGCCACACA CCTTTTTTTT TTTAACAAAA TGGGATTAAA AAATGAATCC CATTTTTTAA TGGGATT |
Predicted Small Protein
Name | ENST00000557966.1_smProtein_539:784 |
Length | 82 |
Molecular weight | 8448.4976 |
Aromaticity | 0.0617283950617 |
Instability index | 56.6444444444 |
Isoelectric point | 5.99493408203 |
Runs | 11 |
Runs residual | 0.00637723816532 |
Runs probability | 0.0457757222464 |
Amino acid sequence | MAAPWTNSNSSSRCMTSMVRALPGCGLGWGDQWASVRTGHFTLAGLEVPSRPPEPSLGLV SPGEADTSFPHISLPVPSLSV |
Secondary structure | LLLLLLLLLLLHHHHHHHHHHLLLLLLLLLLLEEEEELLLEEEELEEELLLLLLLLLLLL LLLLLLLLLLLEELLLLLLLL |
PRMN | - |
PiMo | - |