ENST00000557804.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000557804.1

Source

Gencode19

Same with

lnc-FES-2:3,NONHSAT048464

Classification

intergenic

Length

2159 nt

Genomic location

chr15+:91565851..91579841

Exon number

5

Exons

91565851..91565970,91566543..91566665,91573361..91573471,91575647..91575757,91578148..91579841

Genome context

Sequence
000001 TCCCAGCGCT TCGCGTACCA GGAAGGGGAC GGCGTCCTGA AAGGGACATT TGAAAAACGG AGGCAACGCG TCTATTAATT 000080
000081 AGGTGGCGGC GCCTGGGGTC GCAGCACTCC AGAGGCTGAG AGTCTCGCCC TTTTGCCTAG TGGAGGAGCT CGGCTCACTG 000160
000161 CAAGCTCCGC GCCACAACCC CCCTGCCGCC CCAGGTTCAA GAGATTCTCC TGCCTCAGTC TCCCGAGTAG ACTGGGATTA 000240
000241 CAGAATGCTG GGGTGGAAGA GTTCCCAGTT TTAAAGGAGA AGTACAAGAA GACCTGTAAT TGTTAGCAAG ATATACAGAA 000320
000321 CACAGTGCAC ACAGCAGCGC ACTTCTCAAG TCAGGTCCTC CAAGATGCTC GGCATGGGCT GAGGCGCCTC CTCCTCCTCC 000400
000401 TTACTGCCCA GTTCATCGCC TGTGAGGGGT GGCCAGAGGG GTCCTCGGAC AACTCAACAA GGGAGATGGT CAGAACGATC 000480
000481 AAGCGACCTC TCCAAGGCGG GGACTGAAGC GTCAGGTCTC ACCTGCTCCA ACATCTCCTG CATCCTCTGC CACACGCGGC 000560
000561 ATGCTCTCCA TGGAGATACT CAGCGTACTC GTCTCTCCAT TTGTAGATAC TGCAGCCACT CCATCACCTG CGAGAATTGA 000640
000641 CACAGAAGTT AGGAAGGGCT GTCACTGGTC CTCACATACT CCTGGCCACC TGGGGTCATC TTCCTTCCAC GTCCCTCCCT 000720
000721 CTGCAAAGCC TCACGTGCCC CAGGTATGCT TCCAGCTGTG CCCGCTCCTC CATGGCCTGC TGTAACTGCT GGTTAGCATC 000800
000801 CAGGGCTTTG CAGCATCTAG ACAACTGGAT GGTGAAACAG GAGACATTTC TATCTGGGGA GCCCGGACTG TTCCACACAG 000880
000881 CGCCTTTAAA AGGGCTAGGG CTAGGCTCAA TGTACAACTC AGTCAATAAG GTCTCTGTCA AGTTGCTTTG CTTTAGATAC 000960
000961 AAAAAATTGA ATAATTTTAA AGAGATCTCA GGCTGGGCAT GGTGGCTCAT GCCTGTAATC CCAAAATTTT GGGAGGCTGA 001040
001041 GGCGGGTGGA TTCCTTGAGC TCAGGAGTTC CAGACCAGCC TGGGCAACAT GGCGAAGCCC CGTCTCTACA AATACAAAAA 001120
001121 TTAGCCAGGT GCAGTGGCAC GCACCTGTAG TCCCAGCTAC TTGAGAGCCT GAGGCAGGAG AATAGCTTGA GCCTGGGAGG 001200
001201 TGGAGGTTGC AGTGAGCTGA GATAGCACCA CCGCACTCCA GCCTGGGTCA CAGAGCGAGA CCTCACCTCA AAAAAAGAAA 001280
001281 AAAAAAAGAT CACAACTCTA TTACCAGGAA ATAGTGAAAG TGTTGGCTTG AACCTCAGAA GGAAATAAAC AGACTCATGA 001360
001361 GCTAGCCATA TAAATGTAAT CTATAAAATA ATGGTTTTCA TCCATGATGC TTTATGAAAA AAAATTTTAA GCCCTAACCT 001440
001441 TCAGATTCTG ATTCCCCAGG TCCATGGCAG GGCCTCAATT TGTAGATTTT TAGCAGTCTC TAGAGGATTC TATGGCAGGA 001520
001521 GAAGAACAAG GACTCAAATT TTTCGGCTCT TGGCTGGAGC CTCCCCATAC CCGGCATGAT CCCTAGGCCA TGGCCCCAGC 001600
001601 TGGATGGGGC TCTCACCACC CCAGGGCTGC AGTAATCCCT CCAGGTGTTC AAGAACCTCT GGCATACGCC AGGTAGAAAA 001680
001681 ATGTGTTTCC TTCTGTAGGT CCAAAGCCAG GGATACCATA TGTTCTGTAT TGATATGAAA CAATGACTTG CAATTAAAAC 001760
001761 ATATAAATAT CCTTCCTACT CCTACCCTCC ATCCAATGTG TTTTATTTTT ATGAGTTAAA TAAGAAAACG AGTGGCAATC 001840
001841 GGAGATTTTG TCTAAAAAGT ATATCTACAG GTATCAGTTC TCATCCAGCC TGATCTCATC CAATATCATA TATATTCTCT 001920
001921 TACATGTAAA GTTTCAGAAA AGTATCTTCA CAATGTAAGA CTCAGGCACA CTAGGAGTTC TATAATAAAA CACCAAGTAG 002000
002001 ATCAGAATGT CCAACCTTAC TAGAGAAGAA AAGTGGAATC ATTGGCTATA TTTTCAAATT GCATTCAACA GGAAATTTAA 002080
002081 GTTTTGAGTT TTTTCCACCT TGAACCTGGG AAGCGGAGGT TGTGGTGAGC TGAGATGGCG CCATTGCACT CCAGCCTGG
[back to top]

Predicted Small Protein

Name ENST00000557804.1_smProtein_560:784
Length 75
Molecular weight 7954.1731
Aromaticity 0.0540540540541
Instability index 53.0986486486
Isoelectric point 6.99969482422
Runs 13
Runs residual 0.0330257086355
Runs probability 0.0407103936515
Amino acid sequence MLSMEILSVLVSPFVDTAATPSPARIDTEVRKGCHWSSHTPGHLGSSSFHVPPSAKPHVP
QVCFQLCPLLHGLL
Secondary structure LLEEEEEEEEELLLLLLLLLLLLLLLLHHHHLLLEELLLLLLLLLLLLLEELLLLLLLLH
HHHHHHLHHHHLLL
PRMN -
PiMo -