ENST00000557019.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000557019.1

Source

Gencode19

Same with

lnc-SEC23A-1:4,NONHSAT036501

Classification

intergenic

Length

584 nt

Genomic location

chr14-:39308050..39417410

Exon number

4

Exons

39308050..39308408,39410558..39410577,39410724..39410899,39417382..39417410

Genome context

Sequence
000001 CTCTTCAGCC TACTCAGTGT GAAGATGATT GCTGCCCTCA GCTGTGCCTG GAGCACAGGG CACCTCCAGT TCGGCCTCTC 000080
000081 CAGAAGTAAA CTTGTCTTCT GCCTATCTTG TGTTTGTTGG GAGGAGGTGA CCTGGGACTC TACTACTATT GATGAAGAAT 000160
000161 CCGAAAAAGT CTTCTATTAG CCCTGTGCCA CACCCTACCT ATGAGGCTTT TGGGAAGAAG CAGAGAAATC AGTGTTTACT 000240
000241 GCAGAGAACA CAGAAGCCAG CAAGCAGCAG GGAAGGGAGG CGAACCAATG CAGCAGCCCA CCGGGACCGA GGAGGACACA 000320
000321 CGCAGAGCAA GTCACAGGAA GCGCAGCTGA AAACAAATGG ACGCTTATCC CAAATGCACA GGACACTTAC CAAGAACTGA 000400
000401 TGGTCCGTCA AAGTAAAGCT CAACAGCTTT GGCTGGCAGG ACAGTCAAAC TTTTGGACGA CAGAAAGTAA CAGTGGGAAA 000480
000481 TGGGACAACA TCTGCCAGCA ACGCGAGAGG CCAAGACCAT GGCTGCTACA GGAGGGGTCA GCGTCACAGT ACACGCATGG 000560
000561 CGGCGGTTGC ACATGCATGC CTGG
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Predicted Small Protein

Name ENST00000557019.1_smProtein_200:349
Length 50
Molecular weight 5626.2147
Aromaticity 0.0204081632653
Instability index 80.3571428571
Isoelectric point 10.7456665039
Runs 9
Runs residual 0.0216216216216
Runs probability 0.0495004808731
Amino acid sequence MRLLGRSREISVYCREHRSQQAAGKGGEPMQQPTGTEEDTRRASHRKRS
Secondary structure LEELLLLEEEEEEELLLLLHHHLLLLLLLLLLLLLLLLLLHHHHLLLLL
PRMN -
PiMo -