ENST00000556578.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000556578.1 |
Source |
Gencode19 |
Same with |
lnc-NUMB-2:1,NONHSAT037693 |
Classification |
antisense |
Length |
777 nt |
Genomic location |
chr14-:73738890..73740789 |
Exon number |
3 |
Exons |
73738890..73739416,73739510..73739616,73740647..73740789 |
Genome context |
|
Sequence |
000001 CAGATTCCTA CTTAAGGAAG AGAGGGGCTC CTCATTGTCA CTGTACAGAG CAGGCTGGTC AGCTTTACAC AGGTGTCAGA 000080
000081 TGAACCGTCA CAGCCAGATT TGCATGTTGG CCTCAGGAGG GCTTCAAGGT CCAACATCTC GACATTGCTC TTCTTGAAAA 000160 000161 CAGCAGCCTG TGGTTATGTC AGAGATGCAA ACACTGCTGA AGGCTACAGA GAGAAGCTGG TAACTGGCTG CCGTTGAGGC 000240 000241 TAAACACTGG CCCTATGAAC TATTTTGGAC TGGGGCTGGA ACTAGCCTTC ATCCCTACTG CCAGATGGGC TGAGCGTGAG 000320 000321 GCTGGAAACG TGAACAGCTG GCACAGCAGA AGCTGGAGTA ATACTCATTG CCACAAAGCT GGGCCTGCAG GATCAAATCA 000400 000401 CAGTTGGCCA GCTCTGGCTG GTCGACGCAG TCCCTGCCAG GGTCCCTGGG CTGGGCGGTG GGTGCTGCAG AACGACAGGG 000480 000481 GAGAGAGAAG GTGGTGAGGA AGCTCTGTGT ATGCTGAAAA TTCTCACCTG CCATTTCATT TCCTTCAAAG GAACACAGCA 000560 000561 TTATAACTGC CAGATTGAAA ACGAAGTGCA CTTACCCTGT AACCTTTTAA CCATACGTAC AAACTCTATG AGGGATGATG 000640 000641 ATTTCTACCT GTTTCTTGGC CTCACTTCAA CATGCAGTGG TCCTCCCATT ATTATTTGTG GCCTCAGCCC ACTGAATAGC 000720 000721 TCTTCCTAGA CTCCCAAATA TTTATTGACT GGATAATTAA ACATCTCTTG AAGTTAA |
Predicted Small Protein
Name | ENST00000556578.1_smProtein_254:496 |
Length | 81 |
Molecular weight | 9099.0007 |
Aromaticity | 0.125 |
Instability index | 70.9525 |
Isoelectric point | 10.6653442383 |
Runs | 13 |
Runs residual | 0.0236842105263 |
Runs probability | 0.0298601769191 |
Amino acid sequence | MNYFGLGLELAFIPTARWAEREAGNVNSWHSRSWSNTHCHKAGPAGSNHSWPALAGRRSP CQGPWAGRWVLQNDRGERRW |
Secondary structure | LLEELLLEEEEELLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLL LLLLLLLEEEEELLLLEELL |
PRMN | - |
PiMo | - |