ENST00000556397.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000556397.1 |
Source |
Gencode19 |
Same with |
lnc-OR4M2-6:1,NONHSAT040606 |
Classification |
intergenic |
Length |
530 nt |
Genomic location |
chr15+:20549989..20564412 |
Exon number |
2 |
Exons |
20549989..20550232,20564127..20564412 |
Genome context |
|
Sequence |
000001 CCTCCCGATT TTCCAGCATG ACTAGTGGTG ACAATATTGG GTCTCAATGG GTCTCTCCTG CCTCCAGTCC AGTGCCCTTT 000080
000081 TTTGGGGACC ATTATTGGCT TTTGGGGACC CTGAAGGAGG AATGGCCTGA TTATGCAATT TGGCTGGAGT GGAACGTCCC 000160 000161 CATGACGACA TGGCAATGAG TCTTCCCCAG CAGGCAGATG CCAGATGCAG TGGTGACCAC ACCTGCCATC TGGGAGGATT 000240 000241 CCAGGTGCAC CCCCAGCCCA GGCGACATCA ACGGCCAGCC CCATACGCGT GAGGATTGCG GCACCAGGGG CGCTCAGGAT 000320 000321 TGGGCCGGGC TGCTTCTCAG AAGAGGGGAC ATTGAGCCCA AGCAGGCTGC ACTCCTGCTT GGACGGAAGG TGCATGGGTG 000400 000401 GGGAGGGTAA TCACACCAAT AGAGACATGG ATGGACTTGT GCAGAACATA AATACTCTCT TTGCTTATGT CTATGTTACT 000480 000481 CAAAGGAACC ATGGAAATAA CAAATTCCCA ATTACAATGC AGTAAACTTT |
Predicted Small Protein
Name | ENST00000556397.1_smProtein_197:409 |
Length | 71 |
Molecular weight | 7533.3779 |
Aromaticity | 0.0428571428571 |
Instability index | 59.2571428571 |
Isoelectric point | 6.02154541016 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.0474199689886 |
Amino acid sequence | MPDAVVTTPAIWEDSRCTPSPGDINGQPHTREDCGTRGAQDWAGLLLRRGDIEPKQAALL LGRKVHGWGG |
Secondary structure | LLLEEELLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLLLHHHHHHH HLLLLLLLLL |
PRMN | - |
PiMo | - |