ENST00000555954.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000555954.1

Source

Gencode19

Same with

lnc-SNW1-2:1,NONHSAT038015

Classification

intronic(AS)

Length

700 nt

Genomic location

chr14-:79161664..79164465

Exon number

2

Exons

79161664..79162115,79164218..79164465

Genome context

Sequence
000001 AGATGACTGC GTATAGGGGC AACCTCTTGT AATGTCAAGC CCACTAATTT ATACAAAATA CACGTGGACC AGTGCTGTAC 000080
000081 GGCTTCCTGA TGGCTCAACA ACCGCCAAAG GAGATCTGCC CGTCAGAAGC AATTACAAAG TATTTCTTGC CTGGCCTGTG 000160
000161 AAGCACTTCT GCTTCTAGCC TAATGAAGGC TTTAATCAGG TGGCTTTTCA AAGTGCTCCA AAGAGCCCCT CTGCAATCAG 000240
000241 CAAAAGAGAC AGATGGCAAG AGCTACTGCT GGACACAGAA GAGTGAGTGC CAAGCCAACT GTGCACACTT TATCCTACAG 000320
000321 AGATGGACCA CAATCTACCC ACAACAGCCA GACAGTGGAA ACTGATTGTC ACTGATTCCT TGTCCAGAAC TCAGACCAGC 000400
000401 TCTTCCAGTT ACTTATCAGC TCCTCAATAA GTATTAATTA ATGGCTTATT TTCCTAATGG GAGTTGGGAA TGTTGCCATA 000480
000481 TACATCTGTT CAGTGGCATT AGGCTGACCT AAATTAGACC TTTCCTGACA GCAGCCCCAG GCTTTTTTTC AACGGACCAT 000560
000561 CAGTTTGGAA GTCATTTACT CCTGAAATAT GTCTGTAAGC AAACAATGTT CTTAGAAGAT CAAGCACTTT GAATCTACAA 000640
000641 AAAGAGAAAG GTATCTCTGT AGTAGGCTGA ATAATGTTCC CCAAAGATAT ATCCTAATCC
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Predicted Small Protein

Name ENST00000555954.1_smProtein_182:364
Length 61
Molecular weight 7015.9883
Aromaticity 0.116666666667
Instability index 71.25
Isoelectric point 9.25640869141
Runs 9
Runs residual 0.000265957446809
Runs probability 0.0401479911283
Amino acid sequence MKALIRWLFKVLQRAPLQSAKETDGKSYCWTQKSECQANCAHFILQRWTTIYPQQPDSGN
Secondary structure LHHHHHHHHHHHHHLLHHHHHHLLLLEEEELLLLHHHHHHHHHHHHHHHHHLLLLLLLLL
PRMN -
PiMo -