ENST00000555954.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000555954.1 |
Source |
Gencode19 |
Same with |
lnc-SNW1-2:1,NONHSAT038015 |
Classification |
intronic(AS) |
Length |
700 nt |
Genomic location |
chr14-:79161664..79164465 |
Exon number |
2 |
Exons |
79161664..79162115,79164218..79164465 |
Genome context |
|
Sequence |
000001 AGATGACTGC GTATAGGGGC AACCTCTTGT AATGTCAAGC CCACTAATTT ATACAAAATA CACGTGGACC AGTGCTGTAC 000080
000081 GGCTTCCTGA TGGCTCAACA ACCGCCAAAG GAGATCTGCC CGTCAGAAGC AATTACAAAG TATTTCTTGC CTGGCCTGTG 000160 000161 AAGCACTTCT GCTTCTAGCC TAATGAAGGC TTTAATCAGG TGGCTTTTCA AAGTGCTCCA AAGAGCCCCT CTGCAATCAG 000240 000241 CAAAAGAGAC AGATGGCAAG AGCTACTGCT GGACACAGAA GAGTGAGTGC CAAGCCAACT GTGCACACTT TATCCTACAG 000320 000321 AGATGGACCA CAATCTACCC ACAACAGCCA GACAGTGGAA ACTGATTGTC ACTGATTCCT TGTCCAGAAC TCAGACCAGC 000400 000401 TCTTCCAGTT ACTTATCAGC TCCTCAATAA GTATTAATTA ATGGCTTATT TTCCTAATGG GAGTTGGGAA TGTTGCCATA 000480 000481 TACATCTGTT CAGTGGCATT AGGCTGACCT AAATTAGACC TTTCCTGACA GCAGCCCCAG GCTTTTTTTC AACGGACCAT 000560 000561 CAGTTTGGAA GTCATTTACT CCTGAAATAT GTCTGTAAGC AAACAATGTT CTTAGAAGAT CAAGCACTTT GAATCTACAA 000640 000641 AAAGAGAAAG GTATCTCTGT AGTAGGCTGA ATAATGTTCC CCAAAGATAT ATCCTAATCC |
Predicted Small Protein
Name | ENST00000555954.1_smProtein_182:364 |
Length | 61 |
Molecular weight | 7015.9883 |
Aromaticity | 0.116666666667 |
Instability index | 71.25 |
Isoelectric point | 9.25640869141 |
Runs | 9 |
Runs residual | 0.000265957446809 |
Runs probability | 0.0401479911283 |
Amino acid sequence | MKALIRWLFKVLQRAPLQSAKETDGKSYCWTQKSECQANCAHFILQRWTTIYPQQPDSGN |
Secondary structure | LHHHHHHHHHHHHHLLHHHHHHLLLLEEEELLLLHHHHHHHHHHHHHHHHHLLLLLLLLL |
PRMN | - |
PiMo | - |