ENST00000555325.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000555325.1 |
Source |
Gencode19 |
Same with |
lnc-RGMA-1:1,NONHSAT049667 |
Classification |
intergenic |
Length |
464 nt |
Genomic location |
chr15-:93349000..93351797 |
Exon number |
2 |
Exons |
93349000..93349344,93351679..93351797 |
Genome context |
|
Sequence |
000001 TTTCTTGGTT TTCTGGACGT TCTTCTCTCC TTGGAGCTGC TCTTGTCTTT CCCATTTCAT CTCCAAACCG ATTTTGATTT 000080
000081 CCTGAACGTT TGTCTTGAGC AAGGCCTGCG TTATCTTAGG GCCAGGCACC ATGGCTCATG CTTGTAATCC CCACACTTTG 000160 000161 GGAGGCCAAG GCAGGAGGAT CGCTTGAGCT CAGGAGTCAA GACCAGCCTG GGCAACATAG TAAGACCTCA TCTCTAAAAA 000240 000241 AAATAAATAA ACTATTTCTT AGAAATGTAG TTCCTGTTTA GACCTTTGAA CAATGACCAT GTCTAGTGGT CTCTCCATAG 000320 000321 CACATGATGT ATAAAATTGT TCTTATTTTC ATTACTAACA GCTACAAAAT AACTATAAAG TAGATCATAA ATATGCCATA 000400 000401 TGTAAATATG TATACATAGT GCTTTTATTT TTATGTGGAA TCTAAATCAA ATATGTGAAG AGCT |
Predicted Small Protein
Name | ENST00000555325.1_smProtein_137:280 |
Length | 48 |
Molecular weight | 5216.0674 |
Aromaticity | 0.0425531914894 |
Instability index | 61.214893617 |
Isoelectric point | 10.1659545898 |
Runs | 9 |
Runs residual | 0.0252127659574 |
Runs probability | 0.0488429606078 |
Amino acid sequence | MLVIPTLWEAKAGGSLELRSQDQPGQHSKTSSLKKINKLFLRNVVPV |
Secondary structure | LLEELLHHHHLLLLLEEEELLLLLLLLLLLLHHHHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |