ENST00000548564.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000548564.1 |
Source |
Gencode19 |
Same with |
lnc-SLC48A1-2:5,NONHSAT027955 |
Classification |
intergenic |
Length |
573 nt |
Genomic location |
chr12+:48225158..48231681 |
Exon number |
3 |
Exons |
48225158..48225236,48228022..48228434,48231601..48231681 |
Genome context |
|
Sequence |
000001 AAACACAACT CACAAGCAGA GGTAGGGGTA TGTTCAACCT GATCGTCCTC AAAGTAATGC CAATTAAAAT GAGACAAAGA 000080
000081 AGACAGACAA ATAGCCAGCA GTTCCACAGC GACTCAGGGG ACTGCCAGGG TTCAAATCCT GCTCCTGCTA GATGCCACTT 000160 000161 CTGCTGCTCT TCATTGCTGC CCTAGACAAG GCCAGGCCCT GCGGCGTGCT GCGAGCCTTC CTTCCGTTAT CTTTACCAGC 000240 000241 TCTACATGGT CATTCACAGA TGAGAAAGCT GAAGATCAGA GAGCTCACAC ATTTCCCACA AGGTTACACA GTCAGTAAGA 000320 000321 GACACTATCA GGATTCCAAT GACCTGCTGT TAAAGTTCAT CTCTTATTCA CTCATTGCCT CCCTCAAGGC TGAAGAGTGG 000400 000401 GGTGGAGGGG AGACCAGCAG AGCTACTGAG CTCAATCTGC CTCCTTGGCC CTCCCAGCCC AGAGCTCTGC CAGCGGTGGT 000480 000481 AGGAGGAGTG TGTTCTGGTA GATATCATGG AGCAGGAGTC CCTAGCACCA AGAAGCTGAG ATCCGGAAGA GGCGCCCCAA 000560 000561 AAAATCAGCC TGG |
Predicted Small Protein
Name | ENST00000548564.1_smProtein_29:184 |
Length | 52 |
Molecular weight | 5779.6854 |
Aromaticity | 0.0588235294118 |
Instability index | 63.5607843137 |
Isoelectric point | 9.30023193359 |
Runs | 10 |
Runs residual | 0.0418365365948 |
Runs probability | 0.0471118177 |
Amino acid sequence | MFNLIVLKVMPIKMRQRRQTNSQQFHSDSGDCQGSNPAPARCHFCCSSLLP |
Secondary structure | LLEEEEEEELLEEHHHHLLLLLLLEELLLLLLLLLLLLLLLEEEELLLLLL |
PRMN | - |
PiMo | - |