ENST00000548335.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000548335.1 |
Source |
Gencode19 |
Same with |
lnc-FOXG1-5:5,NONHSAT036120 |
Classification |
intergenic |
Length |
574 nt |
Genomic location |
chr14+:27278623..27289909 |
Exon number |
5 |
Exons |
27278623..27278646,27281439..27281602,27286126..27286252,27287910..27287986,27289728..27289909 |
Genome context |
|
Sequence |
000001 CTAAAACGGA TGTTGGCCTG CCAGGGAGCA GCCAAGGTGA AGTTTTCAAC CAGGCCGACC AACTTCAGAG TCCACTGGCT 000080
000081 TCAAAACAGT GCTTTACATC CTCCTTCCAA CATTATTCAC AAGCCGATCA AGACTGAGAG AGTCACAAGT GTGTGAAACC 000160 000161 TGTATTCTTT CTGACTTCAT TTTCCCTGGT CGAAATTTTT GTAGAATAGA CAAATCAAGA ATGATGACTT CTTAAGATGC 000240 000241 AGTATTCAAG TTCAGAAATC TATACTCAGA TGACCTTATG TAGGTCATCT GCTTCTGAGG TTTATCTCAC CAGTGAGAGT 000320 000321 TGAAAACATA TCCTCTACTT ATATTAAACT AGGATGCATA AGAGGGTTGA TAAAATGGAA TTCAAGTGAA CATTTTATGT 000400 000401 GAAGAACTGC AGTAATGAAT TCTGAATTTG TTCAAATCAT TGAAGATGTG TGAAGACAAA ACATTCACTC AAATCTCTAT 000480 000481 CATGTTAGCA TGTTATTTAT CATTGCTCTG TTCTTCATTG TTGAATAATG CAATTGAGTT AAAAAGAATA AACATTATTT 000560 000561 ACCGAAGACT CATA |
Predicted Small Protein
Name | ENST00000548335.1_smProtein_236:322 |
Length | 29 |
Molecular weight | 3182.4677 |
Aromaticity | 0.107142857143 |
Instability index | 65.5321428571 |
Isoelectric point | 4.25201416016 |
Runs | 6 |
Runs residual | 0.0110663983903 |
Runs probability | 0.0421598068658 |
Amino acid sequence | MQYSSSEIYTQMTLCRSSASEVYLTSES |
Secondary structure | LLLLLHHHEEEEEEEELLLLEEEEEELL |
PRMN | - |
PiMo | - |