ENST00000547799.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000547799.1 |
Source |
Gencode19 |
Same with |
lnc-SLC48A1-1:1,NONHSAT027933 |
Classification |
antisense |
Length |
3299 nt |
Genomic location |
chr12+:48099868..48136077 |
Exon number |
6 |
Exons |
48099868..48099946,48111275..48111419,48112930..48113055,48113383..48113482,48132698..48132794,48133326..48136077 |
Genome context |
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Sequence |
000001 TTTAGCCTGG GCTTGAGCGC GCGCAGAAGT CAGCTTCGTG ACTTCCTTCT CAGGATGGAA CCAGCTTGGT GGCTTGAGGC 000080
000081 TTAGCTAAGG GAGCAGAAGA CTAACCGTGG TCACTACACA GGCTCTCAAA ATCCTTGCAG CAGTTCCCAA ACTCTTGGCA 000160 000161 GCGGGCATTG CAGTGACATT GGTGGTGCTT GTCAAAGGCT TCGTAGCAGC GGCCCTGGCA GGAGGAAAGG GGTTCTGAGT 000240 000241 TGCAAATCAG AAACTTGAAG ATGAAATGGC TACTACGCTG GGTATTGCCT TTATCTTGAA TGCCAGCCTG ATGGTCCAAG 000320 000321 GTGAACAAGC CTTCCTGTGT TTTCTGAATG TGCAGTTCCC CCGCACTTTG CCTGCCACCA TGTAAGATGT GTCTTTGCGC 000400 000401 CTCCTTTGCC TTCCACCATG ATTGTGCGGC CTCCCCAGCC ATGTGGAACG GCCCTGAAGG CAGCCCGTAT TTGTCTGGAT 000480 000481 GTCTTCATTC TTCCAGTCTA AGAACTCCTA ATTCATCTCT GCACTCCCTG AGGCATCAGC ACTTGAGAGT AAACTCCTTT 000560 000561 GAATCCCTTG AGCCCCACGA GGTGGATTTT CTCTCAAGAG CTCCCAGGCT ATGCTGATGA AGTACCTCTT CTCTGCTTCT 000640 000641 CTCCAGAATA GTCAAAACCC TCAAAATCCT CAAAAGTTCC TGGAGGTGGG AGGTTCCACC CCCAACTCTA TCCTCGCCTC 000720 000721 TTCTACTGGT CTAGCCCGCA AGCCCCTCGG AGTTCCTGAG GGGCAGACAG GCCCTGGTGC ACACAGGCGC TCCATGCCAG 000800 000801 GCCCTTGGGC TCTGGAGCCC CTGACACTGC CCTGGCACCT CAGACCCCAG GACTGGACAC CCACATGCTC CAGCCCAGTC 000880 000881 TTCACACAGG ATCTCCTGCC CCCATGCACA CACTGAGGGC CAGGATGCAC CGTGCAACCC CTATCCTAGT GCTGAACACC 000960 000961 CCTTCCTCAG CCAGCTCCCC AAACTCACAG GCTGGAGCTA GGCCCTGGGC CGAGGTTGGG AACCCTGAAA GTGACAAAGG 001040 001041 ACGAGTAGAG GGGCTGCAGG GAAGCCAAGA GTGAGGGTGT CTGGAGGGCA GGGCCGAGCC CAGCTGATCC TAGCAGAGCC 001120 001121 AGGCCGGGCA GGGTGGAGCA CTCACCAGCA GCCTCTCGAG GGCGGAGTAC AGCTTCCGGA CTTTGTGAGG CAGCCGCTGT 001200 001201 GAAAAGGAGG CAGATGAGCG GCTGCTCTGG GGGAGGCCCA GCCCCATCCA GCACTCCCAG GAGGGCCTGA GGCCTGACCT 001280 001281 CAGGAGGGGG CCCTCCAGAC CACACTTACC TCCCAGGTGT GGGCTAGGCG GCTGATGGCC GAGTTGCTGA GGCCAAACAT 001360 001361 GACGGCAAAG AAGGAATTGA GATTCTTCTG CTCCTTGAGG CTGTGAGCAG AAGACCCAGA GACCCTCAGG GTAAGGGAAG 001440 001441 CAGCCACCCC TACAGTGCCC CCAGACAACA GCCAGGCCAG CCTCTGCAGA GATCCAAGCT GGATGGGGTG GGAAGGCAGA 001520 001521 GGCTCCAGGG GACCCAGGGA ACAAATAGGG TGGCAGATTT GGCAACATAC TAAGCAAAGA GGGGGGCTTA GGAAAAGGTA 001600 001601 GCCGGGGGGA CTCTGGCCAC GCCCTACCCA CTGGACAGGG ACTCACTGGG CCGCCAGCTT AATGAACTTC CTGAGCAGCT 001680 001681 GGGCCCGGGG GCCGGGCACG GGGCAGAGAC ACAGCTCGGT GGCCACCCAG TACTGCAGCT CATTGAAGCG GCGCATGAAG 001760 001761 CGCTCCAGGT TGGCGGTGGT GACATCCCGC AGATGCTGGG GGCCCAGCAC ATAGTGGATC AGCTCCACCT GGGTGGGGTC 001840 001841 AGCAGGAGAG GTCAGCGAGT GCTGAGCCGA GCCGGGCGCC CCGCCGCCTG CTCTCCTCCC CCAGCTCTGC CTCCCATACC 001920 001921 TGGTGGATAC TGTTGAAGAG GCTCCAGTCG TGGTCCGTCA GCTGGCCTGC CAGGTCCTTG GCACTCACCA GGTCCAGCCC 002000 002001 CTCAGCAGAG CCCACAGTGG GCCCCAGCTG GTCAGGGTGT GGGATCTGCG GGTGGGAGAG TGCTCAGGGG GCTGCCTGAG 002080 002081 GAATCCAGGG AAAGGCACAG GGTAGGGGGA GAGGGTTGGG GCAAGGACTC TATGCTCGTG TTAGGAGGAG GGTTAGGAGG 002160 002161 GCAGGAGTGG GGAGTAGAGG GTCTCTAGGG GCTATAGCAG CTGGAGGATA GGGCTCCCCA GTGCTGAGAC CCCTCCTTTT 002240 002241 GGGCTCCTGT CTCCTGGGGA ACCCCTAACT AGGGCAGGTC CTCCTCTTTC TCCTTGGGAG CTCCCAACCA GTGCTACCAG 002320 002321 CCCCTGCCCT GCACTATCTT GGGAATTCCC CCATCAGCTG AGGCCCACTC CTTTGTGTGC TGAGGACCCA GCAGCAGCCA 002400 002401 GAGCCAGGCC CCTCCTCCCT CTTCTCCCTG GGACCCTCCC CAGAATCCAC CACTGCCACA CTCAAAATAG ATCTCCTCCC 002480 002481 TGGGCCCTGG CACCCTGCCT GGTCCCTACC AGCTCATGCA CTTCCTGTGG GTTGACAACA AAGAGACGCT CATTGAGCCC 002560 002561 CAGAGATGTG GCCACACCAC GGGCATCTGG CTGCAGGCCA ATGGCATCTG CAAAGACAGC AGAGGCGGAC TGGGTGGGGG 002640 002641 AAGGGAGGGA GGCCGGGGAC CAGCTGGATG CCAGGGTGGA GGTGCTGTTT GGGAGGCTGA GAGGTTGTTT CTCCTAGTAG 002720 002721 CGGGGTTGAA GTCCTGGGTG GTGCTCAGAA TACACAGGTG CATGTGCCCA CGCAGCCACG CAGCCCAGGG AAGCACATCC 002800 002801 AAGAGGATGA GGAAAGATTC TCAGTGAGTC AGGAAGAACC TGGGCAGGGT CTGAGCCTCC CTCAGCCTCA CTTTCTTCCC 002880 002881 TGGTAAAATG GAGACAATAA GACTTGCCCC AACTATTTCA TAAGTCAAAT AAAATAATGT ATATAAATAG TAGCTATAAG 002960 002961 TACATGCTAT GTATAAAAGC CCTTTGAAAA TTGGGAAGTG TCTTATATAA GCCTTGGTGT TGATTTTCAT CAGCTCCTCA 003040 003041 TGGACTGGGA CTGTGCTTGA GTCCCCAGTC CCTAGAGCAG TGGCCTCCAA AGTAAGGTAC ATCAGATCAT CCATGTGCCT 003120 003121 GGGGAAAATA TGAGCTCTTC TACTTACGTT TACTTTTTCT ACCTGCTTTG CATTTCTACT CCATCAATTT CTATTTTATC 003200 003201 TATCTTTATT ATGATATTAA TGTAGTAATA TATGTGTATT ACTTACAAAC AAATATTCAC ACAGTGGGGT GTGGGTTTTA 003280 003281 ATTAAATGTT GGTTATTGA |
Predicted Small Protein
Name | ENST00000547799.1_smProtein_347:616 |
Length | 90 |
Molecular weight | 9767.1211 |
Aromaticity | 0.0674157303371 |
Instability index | 66.8988764045 |
Isoelectric point | 7.02081298828 |
Runs | 10 |
Runs residual | 0.0308437981934 |
Runs probability | 0.0466260378025 |
Amino acid sequence | MCSSPALCLPPCKMCLCASFAFHHDCAASPAMWNGPEGSPYLSGCLHSSSLRTPNSSLHS LRHQHLRVNSFESLEPHEVDFLSRAPRLC |
Secondary structure | LLLLLLLLLLLLLLEEEEHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHH HHHLLEELLLLLLLLLLHHHHHHHLLLLL |
PRMN | - |
PiMo | - |