ENST00000547799.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000547799.1

Source

Gencode19

Same with

lnc-SLC48A1-1:1,NONHSAT027933

Classification

antisense

Length

3299 nt

Genomic location

chr12+:48099868..48136077

Exon number

6

Exons

48099868..48099946,48111275..48111419,48112930..48113055,48113383..48113482,48132698..48132794,48133326..48136077

Genome context

Sequence
000001 TTTAGCCTGG GCTTGAGCGC GCGCAGAAGT CAGCTTCGTG ACTTCCTTCT CAGGATGGAA CCAGCTTGGT GGCTTGAGGC 000080
000081 TTAGCTAAGG GAGCAGAAGA CTAACCGTGG TCACTACACA GGCTCTCAAA ATCCTTGCAG CAGTTCCCAA ACTCTTGGCA 000160
000161 GCGGGCATTG CAGTGACATT GGTGGTGCTT GTCAAAGGCT TCGTAGCAGC GGCCCTGGCA GGAGGAAAGG GGTTCTGAGT 000240
000241 TGCAAATCAG AAACTTGAAG ATGAAATGGC TACTACGCTG GGTATTGCCT TTATCTTGAA TGCCAGCCTG ATGGTCCAAG 000320
000321 GTGAACAAGC CTTCCTGTGT TTTCTGAATG TGCAGTTCCC CCGCACTTTG CCTGCCACCA TGTAAGATGT GTCTTTGCGC 000400
000401 CTCCTTTGCC TTCCACCATG ATTGTGCGGC CTCCCCAGCC ATGTGGAACG GCCCTGAAGG CAGCCCGTAT TTGTCTGGAT 000480
000481 GTCTTCATTC TTCCAGTCTA AGAACTCCTA ATTCATCTCT GCACTCCCTG AGGCATCAGC ACTTGAGAGT AAACTCCTTT 000560
000561 GAATCCCTTG AGCCCCACGA GGTGGATTTT CTCTCAAGAG CTCCCAGGCT ATGCTGATGA AGTACCTCTT CTCTGCTTCT 000640
000641 CTCCAGAATA GTCAAAACCC TCAAAATCCT CAAAAGTTCC TGGAGGTGGG AGGTTCCACC CCCAACTCTA TCCTCGCCTC 000720
000721 TTCTACTGGT CTAGCCCGCA AGCCCCTCGG AGTTCCTGAG GGGCAGACAG GCCCTGGTGC ACACAGGCGC TCCATGCCAG 000800
000801 GCCCTTGGGC TCTGGAGCCC CTGACACTGC CCTGGCACCT CAGACCCCAG GACTGGACAC CCACATGCTC CAGCCCAGTC 000880
000881 TTCACACAGG ATCTCCTGCC CCCATGCACA CACTGAGGGC CAGGATGCAC CGTGCAACCC CTATCCTAGT GCTGAACACC 000960
000961 CCTTCCTCAG CCAGCTCCCC AAACTCACAG GCTGGAGCTA GGCCCTGGGC CGAGGTTGGG AACCCTGAAA GTGACAAAGG 001040
001041 ACGAGTAGAG GGGCTGCAGG GAAGCCAAGA GTGAGGGTGT CTGGAGGGCA GGGCCGAGCC CAGCTGATCC TAGCAGAGCC 001120
001121 AGGCCGGGCA GGGTGGAGCA CTCACCAGCA GCCTCTCGAG GGCGGAGTAC AGCTTCCGGA CTTTGTGAGG CAGCCGCTGT 001200
001201 GAAAAGGAGG CAGATGAGCG GCTGCTCTGG GGGAGGCCCA GCCCCATCCA GCACTCCCAG GAGGGCCTGA GGCCTGACCT 001280
001281 CAGGAGGGGG CCCTCCAGAC CACACTTACC TCCCAGGTGT GGGCTAGGCG GCTGATGGCC GAGTTGCTGA GGCCAAACAT 001360
001361 GACGGCAAAG AAGGAATTGA GATTCTTCTG CTCCTTGAGG CTGTGAGCAG AAGACCCAGA GACCCTCAGG GTAAGGGAAG 001440
001441 CAGCCACCCC TACAGTGCCC CCAGACAACA GCCAGGCCAG CCTCTGCAGA GATCCAAGCT GGATGGGGTG GGAAGGCAGA 001520
001521 GGCTCCAGGG GACCCAGGGA ACAAATAGGG TGGCAGATTT GGCAACATAC TAAGCAAAGA GGGGGGCTTA GGAAAAGGTA 001600
001601 GCCGGGGGGA CTCTGGCCAC GCCCTACCCA CTGGACAGGG ACTCACTGGG CCGCCAGCTT AATGAACTTC CTGAGCAGCT 001680
001681 GGGCCCGGGG GCCGGGCACG GGGCAGAGAC ACAGCTCGGT GGCCACCCAG TACTGCAGCT CATTGAAGCG GCGCATGAAG 001760
001761 CGCTCCAGGT TGGCGGTGGT GACATCCCGC AGATGCTGGG GGCCCAGCAC ATAGTGGATC AGCTCCACCT GGGTGGGGTC 001840
001841 AGCAGGAGAG GTCAGCGAGT GCTGAGCCGA GCCGGGCGCC CCGCCGCCTG CTCTCCTCCC CCAGCTCTGC CTCCCATACC 001920
001921 TGGTGGATAC TGTTGAAGAG GCTCCAGTCG TGGTCCGTCA GCTGGCCTGC CAGGTCCTTG GCACTCACCA GGTCCAGCCC 002000
002001 CTCAGCAGAG CCCACAGTGG GCCCCAGCTG GTCAGGGTGT GGGATCTGCG GGTGGGAGAG TGCTCAGGGG GCTGCCTGAG 002080
002081 GAATCCAGGG AAAGGCACAG GGTAGGGGGA GAGGGTTGGG GCAAGGACTC TATGCTCGTG TTAGGAGGAG GGTTAGGAGG 002160
002161 GCAGGAGTGG GGAGTAGAGG GTCTCTAGGG GCTATAGCAG CTGGAGGATA GGGCTCCCCA GTGCTGAGAC CCCTCCTTTT 002240
002241 GGGCTCCTGT CTCCTGGGGA ACCCCTAACT AGGGCAGGTC CTCCTCTTTC TCCTTGGGAG CTCCCAACCA GTGCTACCAG 002320
002321 CCCCTGCCCT GCACTATCTT GGGAATTCCC CCATCAGCTG AGGCCCACTC CTTTGTGTGC TGAGGACCCA GCAGCAGCCA 002400
002401 GAGCCAGGCC CCTCCTCCCT CTTCTCCCTG GGACCCTCCC CAGAATCCAC CACTGCCACA CTCAAAATAG ATCTCCTCCC 002480
002481 TGGGCCCTGG CACCCTGCCT GGTCCCTACC AGCTCATGCA CTTCCTGTGG GTTGACAACA AAGAGACGCT CATTGAGCCC 002560
002561 CAGAGATGTG GCCACACCAC GGGCATCTGG CTGCAGGCCA ATGGCATCTG CAAAGACAGC AGAGGCGGAC TGGGTGGGGG 002640
002641 AAGGGAGGGA GGCCGGGGAC CAGCTGGATG CCAGGGTGGA GGTGCTGTTT GGGAGGCTGA GAGGTTGTTT CTCCTAGTAG 002720
002721 CGGGGTTGAA GTCCTGGGTG GTGCTCAGAA TACACAGGTG CATGTGCCCA CGCAGCCACG CAGCCCAGGG AAGCACATCC 002800
002801 AAGAGGATGA GGAAAGATTC TCAGTGAGTC AGGAAGAACC TGGGCAGGGT CTGAGCCTCC CTCAGCCTCA CTTTCTTCCC 002880
002881 TGGTAAAATG GAGACAATAA GACTTGCCCC AACTATTTCA TAAGTCAAAT AAAATAATGT ATATAAATAG TAGCTATAAG 002960
002961 TACATGCTAT GTATAAAAGC CCTTTGAAAA TTGGGAAGTG TCTTATATAA GCCTTGGTGT TGATTTTCAT CAGCTCCTCA 003040
003041 TGGACTGGGA CTGTGCTTGA GTCCCCAGTC CCTAGAGCAG TGGCCTCCAA AGTAAGGTAC ATCAGATCAT CCATGTGCCT 003120
003121 GGGGAAAATA TGAGCTCTTC TACTTACGTT TACTTTTTCT ACCTGCTTTG CATTTCTACT CCATCAATTT CTATTTTATC 003200
003201 TATCTTTATT ATGATATTAA TGTAGTAATA TATGTGTATT ACTTACAAAC AAATATTCAC ACAGTGGGGT GTGGGTTTTA 003280
003281 ATTAAATGTT GGTTATTGA
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Predicted Small Protein

Name ENST00000547799.1_smProtein_347:616
Length 90
Molecular weight 9767.1211
Aromaticity 0.0674157303371
Instability index 66.8988764045
Isoelectric point 7.02081298828
Runs 10
Runs residual 0.0308437981934
Runs probability 0.0466260378025
Amino acid sequence MCSSPALCLPPCKMCLCASFAFHHDCAASPAMWNGPEGSPYLSGCLHSSSLRTPNSSLHS
LRHQHLRVNSFESLEPHEVDFLSRAPRLC
Secondary structure LLLLLLLLLLLLLLEEEEHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHH
HHHLLEELLLLLLLLLLHHHHHHHLLLLL
PRMN -
PiMo -