ENST00000547177.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000547177.1 |
Source |
Gencode19 |
Same with |
lnc-HNRNPA1-2:1,NONHSAT028612 |
Classification |
intronic(AS) |
Length |
735 nt |
Genomic location |
chr12+:54656399..54672847 |
Exon number |
2 |
Exons |
54656399..54656721,54672436..54672847 |
Genome context |
|
Sequence |
000001 AGGAGCAGCA GTAAGAAATG AGAAATGCAC TCAGACATCG GAGGGGACAT AATTCTCTTT TAGACAGTGT GACCCGGAGT 000080
000081 ATTAGGGTCA AATGAAACAC AAAGCCAGTC AAACAATTTA AGGGCTAGAG CCTAGACCAG ATAAAGCATC AAGACTGGTG 000160 000161 GTTCACACTG AGCTTAGGAG GAGGGAGCTT TCCAGCATGA GAAATGAGAC ATGGCTGGCA GGATGATGGA GTGATTAAGA 000240 000241 TAGAATCCCA ATACCATGAC AGAGGAAAAG AAGATGAGCC TCTGAACACA ACCTTATCCT TGTGGAAATC TCCAAGGGAA 000320 000321 AGGATCCTGG AATAAGCAGA GTGGGCATTA CCAAAAGGAG ATAGACTGCA TGTAAAACAC ACTTCGAAGG AAATCTAATT 000400 000401 AAAAGGCAAG GAATAATCCA GGTGATGGAT GAATCTTCTG TCCCCAGAAC CCTAAATATT ACCCTCTTTG TTTCTTTTTT 000480 000481 ATTCCAAAGT CAGATATCCT CAAAGGAACA GCAAAAAGAG GGACTTTAGG ATATCTTCAA TGGTGTAAAG AAAAGAAATA 000560 000561 TATGAAAGTT CCCGGGAGAA AGAGACTAAA ATAAAAGCAC TGGGCACATG GATTACATAA AACAGAAAAG GGGTTGTAAG 000640 000641 TATGTGATTA TGACTAGAAA CACAAAACAA TCGACTTCAT TTTTTATTTA ATTTTAATCA CAAATTATTA ACCTTGCAAA 000720 000721 GTTTTAAACA TTAAA |
Predicted Small Protein
Name | ENST00000547177.1_smProtein_203:334 |
Length | 44 |
Molecular weight | 5164.6814 |
Aromaticity | 0.0697674418605 |
Instability index | 53.5069767442 |
Isoelectric point | 5.57220458984 |
Runs | 7 |
Runs residual | 0.0054873268879 |
Runs probability | 0.0463825169707 |
Amino acid sequence | MRHGWQDDGVIKIESQYHDRGKEDEPLNTTLSLWKSPRERILE |
Secondary structure | LLLLLLLLLEEEEEEEELLLLLLLLLLLLLEEEELLLHHHLLL |
PRMN | - |
PiMo | - |