ENST00000544306.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000544306.1 |
Source |
Gencode19 |
Same with |
lnc-ROCK2-3:2,NONHSAT069140 |
Classification |
intergenic |
Length |
1139 nt |
Genomic location |
chr2-:11245443..11272347 |
Exon number |
5 |
Exons |
11245443..11245788,11260889..11261088,11264709..11264911,11268847..11269012,11272124..11272347 |
Genome context |
|
Sequence |
000001 ATTCAGCTGG CGCGCTGCTT CCTATCTTTG TAAGGGAAGA GCTAAGTGCA GACAAAGCCC TGACGAATAG AGGCCTGCGC 000080
000081 AGAGTGCCCG GGGTGCAGGG CAGCAGGGCA GCCAGTGAAC CACTGAGCTC GCACTGTAGC CAGTCCTGTG TGCCCCTGCT 000160 000161 GGATTCTGCT TCTATGAGGG AGGCAGCAAG GAGTTGGGAC TTCACAGGTG AAAGGACTTG CCAGGTTTTG TTCAGGTTTA 000240 000241 GCACAAGCTG TGATGAATAT CTTCAAGCCT CTGCTTCCTG CTGTGGAATT GTTGCCAAAG GACACATTCC CAGATGGGAT 000320 000321 TACTGAGTCA GAGGAAGTGG ACATTGAGTG GCTCTCAACA GACAGGCTGT GTTGCTCTCA CAGTGCCCAG CTTCCCATGG 000400 000401 GTGGCCAGCC GAATGCATTA TGGGAGAAAG CAGGTCTCGT GGATAATATT TCTGAAGATC GGAGCAGGTT GCCAGGTCCA 000480 000481 CGTCGGCCAT GACTGCAGCA CGCTCCGGAG GCAGCAGGGG GCACCCTGGA GCTTCGCATC CTCCTTCAGG CCCGCGGCAT 000560 000561 CTCCCCTGGC TCCACCATCC CCAGGTGTCT CAGGCCTGTT TCCTCCTCAT GAGAGGTGGA GCGGTGGTTC CCAAACACGA 000640 000641 TGTGGGAAGT GTGTTAAAAT GCAGATCCTG GGCTCGACCC TGAAGCTCTT CCGGCATCCA CCTTCCCAGG TGACCAGACT 000720 000721 CTGGGGAAGG CATCACCTCA AGACTCCTGC ACCCTTCCTC CAGAGTCCTG GGATTCAGCT AAATCCTGGG AAGGTGCCTG 000800 000801 CCTCCCTGCT GCGCCTGGCC ACGTGGAAAC CCCTGTAGCT CCCTGGCTGT GCAGGAGCAG CCACAGTGTG CCCCTCCCAG 000880 000881 GACCACCATC CCCCTCACTG TCTCTGAGGC ACCTGCGTGG ACCGGGTCTG GATTGAGTCT CATTTCTCTG GATTCCCACG 000960 000961 GCAGCCGGCG GCTGCCTCTC CCACACCCGT CACTCTGTGT CATGGAAAGC TGTGTGTTTG TCTTCATTCC CACCGAGTCT 001040 001041 GAGCCACTCG AGGTCAGGGC CATGACCGTG AGCTACACGT CCTTGGCGCC CAGTGTGAGC CGTGTACAGT AGAGGCTGAC 001120 001121 TGACGTCTTG GAGGCAGAA |
Predicted Small Protein
Name | ENST00000544306.1_smProtein_488:682 |
Length | 65 |
Molecular weight | 6825.8145 |
Aromaticity | 0.046875 |
Instability index | 47.2171875 |
Isoelectric point | 11.7125854492 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0298631965298 |
Amino acid sequence | MTAARSGGSRGHPGASHPPSGPRHLPWLHHPQVSQACFLLMRGGAVVPKHDVGSVLKCRS WARP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLLEELLLLLLLEEEELE ELLL |
PRMN | - |
PiMo | - |