ENST00000542086.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000542086.1

Source

Gencode19

Same with

lnc-BHLHE41-2:5,NONHSAT027379

Classification

intergenic

Length

815 nt

Genomic location

chr12-:26107738..26111998

Exon number

4

Exons

26107738..26108174,26109160..26109280,26109572..26109694,26111865..26111998

Genome context

Sequence
000001 GCGGCCGCCC AGCGCCCGTC CCCGCGCCGC ACTCCCCGGC ACTCCCCGGC GCTCCCCGCG CCGCGCGCCC CGCACCGGCT 000080
000081 GGAGGCCCCG GCCCCCCGGC GTTCCCTCTC CGCGCACCTC CCGGCCCGCG CTAGGTAGCA GGCAAGAGTG TGGTTATCGT 000160
000161 TGGACCAGGA TTCAGGATCT GACTGAGTAG CTGACTCTTA ATCCAGTTTG TGTTGATCAC CAGGAGGATC TGGACCTCAG 000240
000241 TATTACCACA TCTAGAGCTA TAATCACATC CCTGTTAAGC CTTCCTGAGA TCACACCAAA TGTCCTTGAT GGGAATTGTA 000320
000321 AACAACCCTT ACTTCTGGTT TCTAATGATA TTCCAGGAAA GGAGCCTAAC TAGAGTCAGT GATATGCCAA CTCCACCTTT 000400
000401 GCCTTCCACC ATGTTTGGAA GCTCCCTGAG GCCTCACCAG GAGCAGATGC TCGTCCCATG CTTCCTATAA GCCTGCAGAA 000480
000481 CTGTGAGCCA TAATAAACTG TGAATTATAA ATTGCCTTTA TAGCAATGCA AATGGACCAG TACAGATGGG ATGCTGGGAA 000560
000561 GACAGTTGTT TCCACCTTCA GTAAAGTCCG TGGAACACAG TTGTGACTAT ATTCTAGGCC AGCCAAGATG CTTGTACTCA 000640
000641 GAAAGGAGTG GTCTCAGGAC CATAAGAAAG TGAAAAAATA AAAATAAGAA AATAAAGAAG GGATTGTCAA TGAATCAGAA 000720
000721 TTCATCAAGG TCAAAGTCTT AGGAAATTCC TTCATGAGGA AGTCTAGGGG GGCTATGGAA ATGAAATTTT TAAACAAATA 000800
000801 GGTATGTGGT GCTGG
[back to top]

Predicted Small Protein

Name ENST00000542086.1_smProtein_299:469
Length 57
Molecular weight 6520.6868
Aromaticity 0.125
Instability index 62.8607142857
Isoelectric point 6.51190185547
Runs 10
Runs residual 0.0252732240437
Runs probability 0.0383324500973
Amino acid sequence MSLMGIVNNPYFWFLMIFQERSLTRVSDMPTPPLPSTMFGSSLRPHQEQMLVPCFL
Secondary structure LLEEEEELLLHHHEEEEELLLLLEEELLLLLLLLLLLLLLLLLLLLLLEEEELLLL
PRMN -
PiMo -