ENST00000538641.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000538641.1 |
Source |
Gencode19 |
Same with |
lnc-CASP12-1:2,NONHSAT023932 |
Classification |
intergenic |
Length |
542 nt |
Genomic location |
chr11-:104410659..104480049 |
Exon number |
4 |
Exons |
104410659..104410753,104415427..104415514,104415604..104415877,104479965..104480049 |
Genome context |
|
Sequence |
000001 GAGATCCTGC TTTCTCTTCA GAATGCCATC TCTAGGATGC CAATGGGCTG TGTCTACAGT ACTATGTAGG AAAGTGCTGC 000080
000081 AAGAGGTACT TGCACTGGGA CTACTAAAAG AAACAACTTT ACCCATGAAG AATGCAGAAA AGCAAGGCAG GATGGTGGCC 000160 000161 CACCCTGGAA GGACATGGAG CCAAGGGAGC CTCCCCCATC CAGGGAGGTG GTGAGTGAAT GCTGTGGCCC TGGGAACCCA 000240 000241 CGCTTCTCCC ATGGGTCTTC GTACCCTTGG GTCAGGAGAT CCCCTCGTGG ACCCACTCCA CCAGGGCCTT CAGTCTGACA 000320 000321 CACAGAACTA TGTGGAGTCT CATCAGAGCA GCCATTGAGT TTGCCGAGAA TGATGGTTTC CAGCTTCATC CATGTCCCTG 000400 000401 CAAAAGACAT GAACTCATCA TTTTTTATGG CTCCACAGTA TTCTATGGCT GATGGCATGA TGAAGGCTCT AATCATTGGA 000480 000481 AGGACACCTG CTCATCATAG AGAGATATTT GAAGAAGGCA CAGGGCCTCT GATTAACTTT GA |
Predicted Small Protein
Name | ENST00000538641.1_smProtein_218:451 |
Length | 78 |
Molecular weight | 9062.3974 |
Aromaticity | 0.168831168831 |
Instability index | 42.6496103896 |
Isoelectric point | 6.38177490234 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0373127137834 |
Amino acid sequence | MLWPWEPTLLPWVFVPLGQEIPSWTHSTRAFSLTHRTMWSLIRAAIEFAENDGFQLHPCP CKRHELIIFYGSTVFYG |
Secondary structure | LLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHLLLLEELLLL LLLLEEEEEELEEEEEL |
PRMN | - |
PiMo | - |