ENST00000537801.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000537801.1

Source

Gencode19

Same with

lnc-BHLHE41-2:6,NONHSAT027383

Classification

intergenic

Length

588 nt

Genomic location

chr12-:26107968..26111998

Exon number

4

Exons

26107968..26108174,26109160..26109280,26109572..26109697,26111865..26111998

Genome context

Sequence
000001 GCGGCCGCCC AGCGCCCGTC CCCGCGCCGC ACTCCCCGGC ACTCCCCGGC GCTCCCCGCG CCGCGCGCCC CGCACCGGCT 000080
000081 GGAGGCCCCG GCCCCCCGGC GTTCCCTCTC CGCGCACCTC CCGGCCCGCG CTAGCAGGTA GCAGGCAAGA GTGTGGTTAT 000160
000161 CGTTGGACCA GGATTCAGGA TCTGACTGAG TAGCTGACTC TTAATCCAGT TTGTGTTGAT CACCAGGAGG ATCTGGACCT 000240
000241 CAGTATTACC ACATCTAGAG CTATAATCAC ATCCCTGTTA AGCCTTCCTG AGATCACACC AAATGTCCTT GATGGGAATT 000320
000321 GTAAACAACC CTTACTTCTG GTTTCTAATG ATATTCCAGG AAAGGAGCCT AACTAGAGTC AGTGATATGC CAACTCCACC 000400
000401 TTTGCCTTCC ACCATGTTTG GAAGCTCCCT GAGGCCTCAC CAGGAGCAGA TGCTCGTCCC ATGCTTCCTA TAAGCCTGCA 000480
000481 GAACTGTGAG CCATAATAAA CTGTGAATTA TAAATTGCCT TTATAGCAAT GCAAATGGAC CAGTACAGAT GGGATGCTGG 000560
000561 GAAGACAGTT GTTTCCACCT TCAGTAAA
[back to top]

Predicted Small Protein

Name ENST00000537801.1_smProtein_302:472
Length 57
Molecular weight 6520.6868
Aromaticity 0.125
Instability index 62.8607142857
Isoelectric point 6.51190185547
Runs 10
Runs residual 0.0252732240437
Runs probability 0.0383324500973
Amino acid sequence MSLMGIVNNPYFWFLMIFQERSLTRVSDMPTPPLPSTMFGSSLRPHQEQMLVPCFL
Secondary structure LLEEEEELLLHHHEEEEELLLLLEEELLLLLLLLLLLLLLLLLLLLLLEEEELLLL
PRMN -
PiMo -