ENST00000537730.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000537730.1 |
Source |
Gencode19 |
Same with |
lnc-CIT-6:1,NONHSAT031065 |
Classification |
antisense |
Length |
607 nt |
Genomic location |
chr12-:119468844..119554766 |
Exon number |
4 |
Exons |
119468844..119469127,119474590..119474772,119507420..119507484,119554692..119554766 |
Genome context |
|
Sequence |
000001 AGGCGATGGG CTATAGGATG AGGACCTGCC AGGGCCAAGA AGACACATTT CAGAAGGAGG CTCTTAAAGG CCAAGCCAAG 000080
000081 AAGCAAGAGC ACGGATTTAC ATCTCATTGG CTGAGGGTGC TCCAGGAATT TCTCACACAG AAGCGTGAGT GGCTGAAACG 000160 000161 AAGAGAATGG ACATGGAGCC CACCCGGAAG AGCACCCTTA ACATCATCAT ATCCCTGAAG CACGAGTCGG GGTGGTGGGA 000240 000241 CTGCCCTGGA AACCCTGCAC ACAGCTGGCT TGAGCAGTGG GTATTTTCAT AAGGCATATA TGGGCATCAC AGAACACTTG 000320 000321 GAGCTTTAAT GAAGACAGCT GCCATTCTGT GAGCTGTTCT ATGAAGGAGC CCACTTGGCA AGGAACTGGG GGAGGTCTCA 000400 000401 GATTAACAGC CAGCAAGAAA CTGAATCCTG CTAACAACCA CCTGAATGAA CATGAAAGCA GACCCTTCCC CAATTGAGTC 000480 000481 TTCAGATGAG ACCCAGTGCT CACCTGCACC TAGGTTGGAG CCCTAAGAGA AACCTTGAAG CAGAGGAACC AGCTTAACCT 000560 000561 GATCCATGGA AACTATAAAA TAAAATGTGT GTTGTTTAAA CTGCTAA |
Predicted Small Protein
Name | ENST00000537730.1_smProtein_5:217 |
Length | 71 |
Molecular weight | 8439.5059 |
Aromaticity | 0.128571428571 |
Instability index | 46.5242857143 |
Isoelectric point | 10.0045776367 |
Runs | 10 |
Runs residual | 0.0019801980198 |
Runs probability | 0.0399222752164 |
Amino acid sequence | MGYRMRTCQGQEDTFQKEALKGQAKKQEHGFTSHWLRVLQEFLTQKREWLKRREWTWSPP GRAPLTSSYP |
Secondary structure | LLLEEELLLLLLLHHHHHHHHLLHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHEELLLL LLLLLLLLLL |
PRMN | - |
PiMo | - |