ENST00000536540.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000536540.1 |
Source |
Gencode19 |
Same with |
lnc-MRE11A-1:2,NONHSAT023725 |
Classification |
overlapping(AS),antisense |
Length |
954 nt |
Genomic location |
chr11-:94278496..94473435 |
Exon number |
5 |
Exons |
94278496..94279012,94408802..94408948,94412552..94412702,94428987..94429073,94473384..94473435 |
Genome context |
|
Sequence |
000001 GTTCTGTGGG CTTCTCCTGA GGAGATGGAC GATTTTCAGA GCTTGCAGAA AGAATTTGAG ACCACCTTCA ACCAGAGAAG 000080
000081 CCTCTGTGGA AATGTGCCGT CACTGGCCAG TTGTTCTGTC TGTCTGCTGT GGAACCCAGG CCCGTGAGAA GAGCAGGGGA 000160 000161 GGTATAGTCA TTTCCCTTGT TTTACGGCAG AGGAAACTGA AGATAAAGCT ATGAAGTGAA GCTGGCTAGT GGCTGCCTCA 000240 000241 GGGTTACTAC TGATATCACT GGACCCCTTC AGAACCAAGC ATGAATGAAG CAATCCTTTT TCCCACCTGC AAGTGAGGCT 000320 000321 CTGAGGGATT CTTCAGAAAT CAAGACTTTG ACCCACTCCA TATTATGAAT GCCTCAGCCT ACAAAGAGCT TGCCTAACCC 000400 000401 AACATCAAGG GGTGGACACG TGATGCTGGA CTTCCAGAGC AAAAATGGGT GTTTGAAGAA CTTACTCCCA TGATGCGGCA 000480 000481 GTCAAGGAGA TGCACAGTAG AGGATCAAAA AGCTGACAAC TTGGCCTCCC CTGGGTCGCT TCCAGGGGAG CGCGGCTTCA 000560 000561 CCGCTCGAAC CAGCTGGCCA AGTTCCGTAT GCTCTTGGGC CGGTCCCCAG CCCTCTGTAC AGCCTGGCAC ACCCGGCACC 000640 000641 AAGGCTCGTC CCAGAAGGAG GTGATGTGGA CAGCGTAGCT CCGGCGCCAG TGGAAGTAGC GGCGATAGAC CGCGGGGTTG 000720 000721 CGGTCGAGGA AAAGCAGGTA CGAGGCCAGG GAGGAGGCAC TTGGGAAGTC GTCCACGTGG ATGAAGGCGC CGCGGGGCAC 000800 000801 AAAGCGCTCG TAGTTGGCAC GGTCTGGGCC CAGCACCACC GGCACCGCCC CAGCGAGCAA CGCGTTGCGC CAGAGCTTCT 000880 000881 CGGTGATATA ATCCAGGTGC TGCGAGTTCT CGAAAGCCAG GTAGAACTTG TAGCGGGCCA CTGTGTGCAG GAGC |
Predicted Small Protein
Name | ENST00000536540.1_smProtein_368:472 |
Length | 35 |
Molecular weight | 3707.3081 |
Aromaticity | 0.0294117647059 |
Instability index | 60.6911764706 |
Isoelectric point | 9.78533935547 |
Runs | 5 |
Runs residual | 0.0390915860015 |
Runs probability | 0.0403285638581 |
Amino acid sequence | MPQPTKSLPNPTSRGGHVMLDFQSKNGCLKNLLP |
Secondary structure | LLLLLLLLLLLLLLLLEEEEEELLLLLHHHLLLL |
PRMN | - |
PiMo | - |