ENST00000536540.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000536540.1

Source

Gencode19

Same with

lnc-MRE11A-1:2,NONHSAT023725

Classification

overlapping(AS),antisense

Length

954 nt

Genomic location

chr11-:94278496..94473435

Exon number

5

Exons

94278496..94279012,94408802..94408948,94412552..94412702,94428987..94429073,94473384..94473435

Genome context

Sequence
000001 GTTCTGTGGG CTTCTCCTGA GGAGATGGAC GATTTTCAGA GCTTGCAGAA AGAATTTGAG ACCACCTTCA ACCAGAGAAG 000080
000081 CCTCTGTGGA AATGTGCCGT CACTGGCCAG TTGTTCTGTC TGTCTGCTGT GGAACCCAGG CCCGTGAGAA GAGCAGGGGA 000160
000161 GGTATAGTCA TTTCCCTTGT TTTACGGCAG AGGAAACTGA AGATAAAGCT ATGAAGTGAA GCTGGCTAGT GGCTGCCTCA 000240
000241 GGGTTACTAC TGATATCACT GGACCCCTTC AGAACCAAGC ATGAATGAAG CAATCCTTTT TCCCACCTGC AAGTGAGGCT 000320
000321 CTGAGGGATT CTTCAGAAAT CAAGACTTTG ACCCACTCCA TATTATGAAT GCCTCAGCCT ACAAAGAGCT TGCCTAACCC 000400
000401 AACATCAAGG GGTGGACACG TGATGCTGGA CTTCCAGAGC AAAAATGGGT GTTTGAAGAA CTTACTCCCA TGATGCGGCA 000480
000481 GTCAAGGAGA TGCACAGTAG AGGATCAAAA AGCTGACAAC TTGGCCTCCC CTGGGTCGCT TCCAGGGGAG CGCGGCTTCA 000560
000561 CCGCTCGAAC CAGCTGGCCA AGTTCCGTAT GCTCTTGGGC CGGTCCCCAG CCCTCTGTAC AGCCTGGCAC ACCCGGCACC 000640
000641 AAGGCTCGTC CCAGAAGGAG GTGATGTGGA CAGCGTAGCT CCGGCGCCAG TGGAAGTAGC GGCGATAGAC CGCGGGGTTG 000720
000721 CGGTCGAGGA AAAGCAGGTA CGAGGCCAGG GAGGAGGCAC TTGGGAAGTC GTCCACGTGG ATGAAGGCGC CGCGGGGCAC 000800
000801 AAAGCGCTCG TAGTTGGCAC GGTCTGGGCC CAGCACCACC GGCACCGCCC CAGCGAGCAA CGCGTTGCGC CAGAGCTTCT 000880
000881 CGGTGATATA ATCCAGGTGC TGCGAGTTCT CGAAAGCCAG GTAGAACTTG TAGCGGGCCA CTGTGTGCAG GAGC
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Predicted Small Protein

Name ENST00000536540.1_smProtein_368:472
Length 35
Molecular weight 3707.3081
Aromaticity 0.0294117647059
Instability index 60.6911764706
Isoelectric point 9.78533935547
Runs 5
Runs residual 0.0390915860015
Runs probability 0.0403285638581
Amino acid sequence MPQPTKSLPNPTSRGGHVMLDFQSKNGCLKNLLP
Secondary structure LLLLLLLLLLLLLLLLEEEEEELLLLLHHHLLLL
PRMN -
PiMo -